Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03964 and BPUM_2366

See DNA alignment / Visit BSNT_03964 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:26
# Commandline: needle
#    -asequence pep-align/BSNT_03964___yrrR.1.24716.seq
#    -bsequence pep-align/BPUM_2366.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03964___yrrR-BPUM_2366.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03964___yrrR-BPUM_2366.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03964___yrrR
# 2: BPUM_2366
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 587
# Identity:     354/587 (60.3%)
# Similarity:   452/587 (77.0%)
# Gaps:          10/587 ( 1.7%)
# Score: 1825.0
# 
#
#=======================================

BSNT_03964___      1 MKISKRMKLAVIAFLIVFFL--LLLRLAEIQLFFTESFSKKKINLIQESV     48
                       :.|:.::.....:|...|  ||.|||||||||||||||..||||||||
BPUM_2366          1 --MLKKRRIGWTGAIIFMLLLGLLTRLAEIQLFFTESFSKLDINLIQESV     48

BSNT_03964___     49 KQRTEEVLISDGRGSFLDRNGRALTGQSEPAVVLFPFLLTQDWP-IKKVA     97
                     |||||||:||||||.||||||.||..:.:|||:|||| |..|.| :|:.|
BPUM_2366         49 KQRTEEVVISDGRGEFLDRNGEALLTKEQPAVILFPF-LQYDLPHLKQTA     97

BSNT_03964___     98 DILGMSEDNLRQTLGQAKKPVILQQKKIKTLSKQSITKINSLKYPGIYGV    147
                     .||.|.||.|::.|.:.|||:||:.    .::|:.:..||.:||.|:|||
BPUM_2366         98 SILEMEEDELKKQLTENKKPLILKD----DITKKKLKDINDMKYSGVYGV    143

BSNT_03964___    148 YMENEDKPSLASHTIGSTNQDPALLRKKYPDKGSLPITTEIGTTGLERTF    197
                     ||:.:||..||.||:|.|:::|.|||::||||..|.|.|||||.|||.||
BPUM_2366        144 YMKEKDKKRLALHTLGFTSENPELLRERYPDKKELSIRTEIGTFGLESTF    193

BSNT_03964___    198 DEFLLPEQDTKLLYHVDGKGNPLFGMDVKYTAEANTFYPLQVKTTIDQSI    247
                     ||||||||||||||||||:|||||||||||||||::||||||:||||:|:
BPUM_2366        194 DEFLLPEQDTKLLYHVDGRGNPLFGMDVKYTAEAHSFYPLQVQTTIDESM    243

BSNT_03964___    248 QKAMEEVLDEQGLKKGGAVLLDIENSSVLGIVSKPDADVSRQNTLQNYML    297
                     |..||:||.:||:.||||||||||:||||.:.|.|:.....::..:||||
BPUM_2366        244 QAEMEKVLKDQGVAKGGAVLLDIESSSVLAMASTPNITSKNRHEARNYML    293

BSNT_03964___    298 TPIYPGSVFKTVIAAAAIENNMVKPSQTFNCNFNLYGEPGDDKGTLSFDE    347
                     |.:.|||||||.:.|||||.|:.:|...::|..||||||...:..|:..|
BPUM_2366        294 TAMAPGSVFKTAVLAAAIEKNLDQPQTMYDCRKNLYGEPEGTQEVLNLSE    343

BSNT_03964___    348 SFAQSCNYTFTSLAEQLMKKDSSVIEDMSEKLALTDRAGWEGKLYHETDF    397
                     ||:|||||||.:||::|::.|..:||..:.||.|.|||||||.:||:..|
BPUM_2366        344 SFSQSCNYTFATLADKLIQTDDQIIEKTAAKLGLIDRAGWEGDVYHKKHF    393

BSNT_03964___    398 RQLYNEKSGVIWGDEKDKSVKKAIAQTAIGQKNVKVTPLEVANMMATIAR    447
                     :|...|::|.:|||::||.||||:|||||||||||.|||::|||||:|||
BPUM_2366        394 KQFDREETGNVWGDKRDKHVKKAVAQTAIGQKNVKTTPLQMANMMASIAR    443

BSNT_03964___    448 GGEKRQVKIAEQIEYKNGTTLVTFKDQKLKGETIDKYTSQQLQKILRRVV    497
                     |||:::|||||::.|:||||::||::::.:|.:||:||:|:|||.||:||
BPUM_2366        444 GGERKEVKIAEKVLYQNGTTMLTFQNKRPEGGSIDRYTAQKLQKYLRQVV    493

BSNT_03964___    498 ESPSGTGRRFQDLPYTVAGKSGTAQTGKLSKEKETLYEKWFAGYFPADKP    547
                     .|..||||||||||:.|||||||||||....:...||.||||||||.:||
BPUM_2366        494 TSDKGTGRRFQDLPFDVAGKSGTAQTGSKDHKGNPLYHKWFAGYFPVEKP    543

BSNT_03964___    548 KYALVVLHMDTPGDKALTNSVFYDIVKKVHEIEINQK    584
                     ||||||:|:|....:|.||..||||||||:|||..|.
BPUM_2366        544 KYALVVVHLDEASGRAKTNDAFYDIVKKVNEIEKKQT    580


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_03964 and BPUM_2366

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
