Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03964 and BPUM_2366
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:27
# Commandline: needle
# -asequence dna-align/BSNT_03964___yrrR.1.24716.seq
# -bsequence dna-align/BPUM_2366.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03964___yrrR-BPUM_2366.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03964___yrrR-BPUM_2366.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03964___yrrR
# 2: BPUM_2366
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1921
# Identity: 1229/1921 (64.0%)
# Similarity: 1229/1921 (64.0%)
# Gaps: 344/1921 (17.9%)
# Score: 3659.5
#
#
#=======================================
BSNT_03964___ 1 ATG--AAGATATCGAAACGAATGAAGCTGG-CA-GTCATCGCTTTTTTGA 46
||| ||.|.|.||.| |||| |.|.||| || || |||.||
BPUM_2366 1 ATGCTAAAAAAACGTA--GAAT-AGGGTGGACAGGT----GCTATT---- 39
BSNT_03964___ 47 TTGTATTTTTTCTGCTTCTGCT------------GAGGCTTGCGGAAATC 84
.|||||.||||.||||| .||.||.||.|||||.
BPUM_2366 40 -----ATTTTTATGCTGCTGCTTGGTCTTCTCACCAGACTGGCAGAAATT 84
BSNT_03964___ 85 CAGCTGTTTTTCACAGAATCATTTTCTAAAAAG---AAAATTAATTTGAT 131
||.||.||||||||||||||.||||| |||| .|.||.||.||.||
BPUM_2366 85 CAACTATTTTTCACAGAATCTTTTTC---AAAGCTTGATATCAACTTAAT 131
BSNT_03964___ 132 TCAAGAAAGTGTGAAACAGCGGACGGAGGAAGTGCTCATTTCAGATGGAA 181
.|||||||||||.||||||||.||.||.||.|||.|||||||||||||..
BPUM_2366 132 ACAAGAAAGTGTCAAACAGCGTACAGAAGAGGTGGTCATTTCAGATGGCC 181
BSNT_03964___ 182 GAGGCTCTTTTTTAGATCGAAACGGGCG-GGCG---CTGACAGGACAAAG 227
|.||....||||||||||||||| |||| |||| ||.||| ||||
BPUM_2366 182 GCGGTGAATTTTTAGATCGAAAC-GGCGAGGCGCTTCTCACA----AAAG 226
BSNT_03964___ 228 --CGAGCCCGCGGTTGTTTTGTTCCCTTTTCTGC----TGA-----CGCA 266
| ||||.|||||..|.||.||.|||||.|||| ||| |.|
BPUM_2366 227 AAC-AGCCTGCGGTGATCTTATTTCCTTTCCTGCAATATGATCTTCCTC- 274
BSNT_03964___ 267 GGATTGGCCGATCAAAAAAGTTGCGGACATCCTCGGCATGTCTGAAGATA 316
||| |.|||.||..|||....||.||.|..|||...||||||.
BPUM_2366 275 --ATT------TAAAACAAACTGCCTCTATTCTTGAGATGGAAGAAGATG 316
BSNT_03964___ 317 ATTTGCGCCAGACACTAGGTCAGGCAAAAA--AACCGGTCATTTTGCAGC 364
| ||| |||||| |||.|
BPUM_2366 317 A------------ACT--------CAAAAAACAACTG------------- 333
BSNT_03964___ 365 AAAAGAAAATCAAAA-------CACTTTCAAA----ACAATCTATCACAA 403
|.|||||| ||||| ||.|.||||| || |||||.|
BPUM_2366 334 -ACAGAAAA-CAAAAAACCTCTCATTCTCAAAGATGAC-----ATCACGA 376
BSNT_03964___ 404 AA---------------ATCAATTCTTTGAAATATCCCGGCATTTACGGC 438
|| ||||||..|.||||||||.|.||..|.||||||
BPUM_2366 377 AAAAAAAGCTGAAAGACATCAATGATATGAAATATTCAGGTGTGTACGGC 426
BSNT_03964___ 439 GTATATATG---GAGAATGA-AGACAAGCCCAGCCTTG--CTTCACATAC 482
||||||||| |||||.|| |.|.|| ||.|||| ||.||| ||
BPUM_2366 427 GTATATATGAAAGAGAAGGACAAAAAA----AGACTTGCCCTCCAC--AC 470
BSNT_03964___ 483 GATAGGGAGCACGAACCAAGATCCGGCGCTGCTTCGCAAGAAA----TAT 528
..||||...|||||...|..||||.|...|||| .|||.| |||
BPUM_2366 471 ATTAGGTTTCACGAGTGAGAATCCAGAATTGCT----CAGAGAGCGTTAT 516
BSNT_03964___ 529 CCTGACAAGGGAAG-TCTTCCGATTACAACAGAAATCGGAACAACCGGCT 577
|||||||| ..||| .|||.|.||....|||||||||||.||....||..
BPUM_2366 517 CCTGACAA-AAAAGAGCTTTCCATCCGTACAGAAATCGGTACTTTTGGGC 565
BSNT_03964___ 578 TAGAACGGACATTTGACGAGTTTTTGCTTCCGGAACAAGACACAAAGCTT 627
|.|||.|.||.||||||||.|||.|..|.||.||.|||||||||||..|.
BPUM_2366 566 TGGAAAGTACCTTTGACGAATTTCTATTACCCGAGCAAGACACAAAATTG 615
BSNT_03964___ 628 TTATATCATGTGGACGGAAAAGGAAACCCTTTGTTTGGCATGGACGTCAA 677
|||||||||||||||||||..|||||||||||||||||.|||||||||||
BPUM_2366 616 TTATATCATGTGGACGGAAGGGGAAACCCTTTGTTTGGGATGGACGTCAA 665
BSNT_03964___ 678 ATATACAGCTGAAGCCAATACATTTTATCCGCTCCAGGTCAAAACAACGA 727
|||||||||.||.||..||.||||||||||.||.||.||..|||||||.|
BPUM_2366 666 ATATACAGCAGAGGCTCATTCATTTTATCCTCTTCAAGTTCAAACAACAA 715
BSNT_03964___ 728 TCGATCAAAGCATTCAA----AAAGCGATGGAGGAGGTATTGGATGAACA 773
|.|||.|||||||.||| || ||||||.|||||.|..|.||.||
BPUM_2366 716 TTGATGAAAGCATGCAAGCTGAA----ATGGAGAAGGTACTAAAAGACCA 761
BSNT_03964___ 774 GGG----GCTGAAAAAGGGAGGAGCTGTGCTGCTGGACATCGAAAATAGC 819
.|| || ||||||.||.||.||.|||||.|||||.||||..||.
BPUM_2366 762 AGGCGTCGC----AAAGGGCGGGGCCGTTCTGCTCGACATTGAAAGCAGT 807
BSNT_03964___ 820 AGTGTTCTGGGAATTGTAAG-----CAAAC--CAGATGCAGACGTGTCCC 862
|||||.||||..||.|..|| ||||| ||.|.|||.| ..||
BPUM_2366 808 AGTGTGCTGGCGATGGCTAGTACACCAAACATCACAAGCAAA----AACC 853
BSNT_03964___ 863 GGCA--AAACACACTTCA-AAATTATATGCTGACGCCAAT-CTAT----C 904
|||| ||.|| | ||||||||||||||| | |||| |
BPUM_2366 854 GGCATGAAGCA------AGAAATTATATGCTGAC-----TGCTATGGCAC 892
BSNT_03964___ 905 CCGGATCAGTTTTTAAAA---CAGTCATTGCCGCAGCTGCAATCGAAAAT 951
|.||.||.||.||||||| |.||..|||||||| |||||||||||.
BPUM_2366 893 CAGGCTCGGTCTTTAAAACCGCTGTACTTGCCGCA---GCAATCGAAAAA 939
BSNT_03964___ 952 AATATGGTGA--AGCCTAGTCAAACCTTTAATTGC---------AATTTT 990
||..| ||| |||| .|||||..|..||..| ||||
BPUM_2366 940 AACCT--TGACCAGCC---ACAAACGATGTATGACTGTCGAAAGAATT-- 982
BSNT_03964___ 991 AACCTGTACGGGGAACCGG--GGGACGACAAAGGAA--CCT-----TGTC 1031
|.||.||.||.||.| ||.||| .||||| ||| ||||
BPUM_2366 983 ----TATATGGAGAGCCAGAAGGAACG---CAGGAAGTCCTGAATCTGTC 1025
BSNT_03964___ 1032 TTTTGATGAAAGTTTTGCCCAAAGCTGTAATTACACATTTACGAGTCTTG 1081
|||.||.|||.|.||.|||||||||||.||.|||.|.|..||||
BPUM_2366 1026 ------TGAGAGCTTTTCACAGAGCTGTAATTATACCTTTGCAACACTTG 1069
BSNT_03964___ 1082 CAGAACAA-TTAATGAAAAAAGACAGCTC-AGTTATTGAAGATATGTCCG 1129
|.| |||| .|.||..|||.||| .|.|| |.|.||.|||.|.|.|.|.|
BPUM_2366 1070 CTG-ACAAGCTGATCCAAACAGA-TGATCAAATCATCGAAAAGACGGCTG 1117
BSNT_03964___ 1130 AGAAGCTGGCTCTCACTGATCGGGCAGGCTGGGA--GGGAAAACTG--TA 1175
..|||||.|..||||.||||||.||.|||||||| |||| || ||
BPUM_2366 1118 CAAAGCTTGGACTCATTGATCGAGCTGGCTGGGAAGGGGA----TGTCTA 1163
BSNT_03964___ 1176 CC--ACGAAACCGATTTCCGCCAGCTGTATAACGAAAAAAGCGGC---GT 1220
.| |.|||.| |||||...|||.|..||...|||.|||.|||| ||
BPUM_2366 1164 TCATAAGAAGC--ATTTCAAACAGTTTGATCGTGAAGAAACCGGCAATGT 1211
BSNT_03964___ 1221 GATTTGGGGGGATGAAAAAGACAA--ATCAGTCAAAAAAGCCATTGCGCA 1268
| |||||.|||.|||.|||||| || ||||||||||||.||||.||
BPUM_2366 1212 G---TGGGGAGATAAAAGAGACAAGCAT--GTCAAAAAAGCCGTTGCCCA 1256
BSNT_03964___ 1269 AACAGCAATCGGGCAGAAAAATGTAAAGGTAACG---CCGCTAGAGGTAG 1315
|||.|||||.||.||.||||||||.|| |||| ||..||.|..|.|
BPUM_2366 1257 AACCGCAATAGGACAAAAAAATGTCAA---AACGACTCCTTTACAAATGG 1303
BSNT_03964___ 1316 CCAATATGATGGCGACAATCGCCCGCGGCGGAGAA--AAACGGCAGGTGA 1363
||||||||||||||.|.||.||..|.|||||.||| |||.| |.||||
BPUM_2366 1304 CCAATATGATGGCGTCGATTGCAAGAGGCGGGGAACGAAAAG--AAGTGA 1351
BSNT_03964___ 1364 AAATTGCCGAACAAATTG-AGTATAAGAACGGCACAACGCTCGTTACATT 1412
||||.||.||| |||.|| .||||.|.|||||.||||||.|..|.||.||
BPUM_2366 1352 AAATCGCTGAA-AAAGTGCTGTATCAAAACGGAACAACGATGCTAACCTT 1400
BSNT_03964___ 1413 T-------AAGGATCAGAAGCTCAAAGGGGAAACG-ATAGACAAATATAC 1454
| ||.||.|||||| |.||.| | ||.|||...|||||
BPUM_2366 1401 TCAAAACAAACGACCAGAAG------GAGGCA--GTATTGACCGCTATAC 1442
BSNT_03964___ 1455 GTCACAGCAGCTTCAAAAAATAC-TGCGGCGGGTGGTAGAATCTCCTTCT 1503
..|.||..||||.| ||||.||| |..|||.|||||| || |.|||
BPUM_2366 1443 AGCTCAAAAGCTGC-AAAAGTACTTAAGGCAGGTGGT-GA-----CGTCT 1485
BSNT_03964___ 1504 ------GGAACGGGCAGAAGGTTTCAAGATCTTCCGTATACTGTAGCAGG 1547
|||||.||.||||||||||||||.|||||||....|||.||.||
BPUM_2366 1486 GACAAAGGAACAGGAAGAAGGTTTCAAGACCTTCCGTTCGATGTGGCGGG 1535
BSNT_03964___ 1548 GAAATCGGGCACAGCCCAAACAGGC----AAGCTTTCAAAAGAGAAGGAA 1593
||||||.|||||.||||||||.||| ||| .|||.||| ||.|
BPUM_2366 1536 GAAATCAGGCACTGCCCAAACCGGCAGTAAAG--ATCACAAG----GGGA 1579
BSNT_03964___ 1594 A--CGCTCTATGAAAAATGGTTTGCCGGATATTTTCCCGCGGATAAGCCG 1641
| ||||.|||.|.||.||||||||.|||||||||||.|.|||.||.||.
BPUM_2366 1580 ATCCGCTTTATCATAAGTGGTTTGCTGGATATTTTCCGGTGGAAAAACCA 1629
BSNT_03964___ 1642 AAATACGCTCTGGTTGTTTTACACATGGATACACCGGGAGATAA------ 1685
|||||||||.|.||.|||.|.|||.|.||| |||..||
BPUM_2366 1630 AAATACGCTTTAGTCGTTGTTCACCTTGAT-------GAGGCAAGTGGAC 1672
BSNT_03964___ 1686 -GGCTCTGACAAATTCGGTGTTTTATGATATTGTTAAAAAAGTACACGAA 1734
||||..|||||||...|.|||||||||||||||.|||||.||..|||||
BPUM_2366 1673 GGGCTAAGACAAATGATGCGTTTTATGATATTGTAAAAAAGGTCAACGAA 1722
BSNT_03964___ 1735 ATTGAAATCAATCAGAAATAG 1755
|||||||..||.||||.||||
BPUM_2366 1723 ATTGAAAAGAAACAGACATAG 1743
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