Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03956 and BPUM_2359

See DNA alignment / Visit BSNT_03956 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:26
# Commandline: needle
#    -asequence pep-align/BSNT_03956___yrhC.1.24716.seq
#    -bsequence pep-align/BPUM_2359___yrhC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03956___yrhC-BPUM_2359___yrhC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03956___yrhC-BPUM_2359___yrhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03956___yrhC
# 2: BPUM_2359___yrhC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 79
# Identity:      36/79 (45.6%)
# Similarity:    48/79 (60.8%)
# Gaps:           3/79 ( 3.8%)
# Score: 189.0
# 
#
#=======================================

BSNT_03956___      1 --MHKNRMKSLKEDYKHFAFTLLAVSTFLYIGAVLPDQGLTLGQKSTMFL     48
                       ..|.:...|..|||.:||.|||||||||||.::|:|.:....|..|..
BPUM_2359___y      1 MIQVKKKWSGLVTDYKQYAFILLAVSTFLYIGTIIPNQHIEASPKMLMMG     50

BSNT_03956___     49 ADCVFLAGAFFCADRSLIYKKRLEEADE-     76
                     .|||||..||.|..|::.::|:|:|.|| 
BPUM_2359___y     51 IDCVFLLAAFLCVRRAIFFQKKLQELDED     79


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.