Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03956 and BPUM_2359

See Amino acid alignment / Visit BSNT_03956 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:26
# Commandline: needle
#    -asequence dna-align/BSNT_03956___yrhC.1.24716.seq
#    -bsequence dna-align/BPUM_2359___yrhC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03956___yrhC-BPUM_2359___yrhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03956___yrhC-BPUM_2359___yrhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03956___yrhC
# 2: BPUM_2359___yrhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 265
# Identity:     159/265 (60.0%)
# Similarity:   159/265 (60.0%)
# Gaps:          59/265 (22.3%)
# Score: 392.0
# 
#
#=======================================

BSNT_03956___      1 ---------TTGCACAAAAA-TAGAATGAAATCTTTAAAAGA-AGACTAC     39
                              .||.|.||||| |.||.||     .||.|..|| |||.|||
BPUM_2359___y      1 GTGATTCAAGTGAAGAAAAAGTGGAGTG-----GTTTAGTGACAGATTAC     45

BSNT_03956___     40 AAGCATTTTGCTTTTACATTGCTTGCAGTCAGCACTTTTTTATATATAGG     89
                     |||||.|..|||||||..||||||||.||||||||.|||||||||||.||
BPUM_2359___y     46 AAGCAGTACGCTTTTATTTTGCTTGCTGTCAGCACCTTTTTATATATTGG     95

BSNT_03956___     90 TGCAGTTC-TCCCTGATCAAGGCTTAACAT-TAGGC----CAGAAATCGA    133
                     |.| |.|| |.||..|.|||     .|||| .|.||    |.||||..|.
BPUM_2359___y     96 TAC-GATCATACCAAACCAA-----CACATCGAAGCATCTCCGAAAATGC    139

BSNT_03956___    134 CGATGTT-----TTTAGCGGATTGCGTATTT----TTAGCCGGTGCCTTC    174
                     .||||.|     ||     |||||.|| |||    |||||.|.|  .|||
BPUM_2359___y    140 TGATGATGGGAATT-----GATTGTGT-TTTCTTATTAGCAGCT--TTTC    181

BSNT_03956___    175 TTT-TGCGCTGAC---CGTTCACTTATTT-ACAAGAAGCGTCTGGAAGA-    218
                     ||| ||.| .|||   ||.|  |||.||| |.|||||   .|||.|||| 
BPUM_2359___y    182 TTTGTGTG-AGACGCGCGAT--CTTTTTTCAAAAGAA---ACTGCAAGAA    225

BSNT_03956___    219 --AGCTGACGAATAA    231
                       ||.|||.||.|||
BPUM_2359___y    226 CTAGATGAAGATTAA    240


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