Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_06175 and BPUM_2355
See
DNA alignment /
Visit
BSNT_06175 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:38
# Commandline: needle
# -asequence pep-align/BSNT_06175___yycR.1.24716.seq
# -bsequence pep-align/BPUM_2355___yycR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_06175___yycR-BPUM_2355___yycR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06175___yycR-BPUM_2355___yycR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06175___yycR
# 2: BPUM_2355___yycR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 409
# Identity: 350/409 (85.6%)
# Similarity: 376/409 (91.9%)
# Gaps: 6/409 ( 1.5%)
# Score: 1884.0
#
#
#=======================================
BSNT_06175___ 1 MGGMALTGNKAVVYKGKGTVAVEDIGYPELILRDGPGVPKANVNRKCEHG 50
::|||.|||||.|.|||||||||:||||||||||||||.||||||
BPUM_2355___y 1 -----MSGNKGVVYKGAGNVAVEDIGYPDLILRDGPGVPKANVGRKCEHG 45
BSNT_06175___ 51 VILKVITTNICGSDQHMVRGRTTAPEGLVLGHEITGEVIETGRDVEFIKK 100
|||||:|||||||||||||||||||.||||||||||||:|.|||||||:|
BPUM_2355___y 46 VILKVVTTNICGSDQHMVRGRTTAPAGLVLGHEITGEVVEVGRDVEFIQK 95
BSNT_06175___ 101 GDIVSVPFNIACGRCVMCKTQKTHVCLNVNPDRPGSAYGYVDMGGWIGGQ 150
||:||||||||||||||||.||||||||||||||||||||||||||:|||
BPUM_2355___y 96 GDLVSVPFNIACGRCVMCKEQKTHVCLNVNPDRPGSAYGYVDMGGWVGGQ 145
BSNT_06175___ 151 SEYVMVPYADFQLLVFPDKEQALEKILDLTMLSDIFPTGFHGAYTAGVQT 200
||||||||||||||.||||:||:|||||||||||||||||||||||||:.
BPUM_2355___y 146 SEYVMVPYADFQLLKFPDKDQAMEKILDLTMLSDIFPTGFHGAYTAGVKP 195
BSNT_06175___ 201 GSTVYIAGAGPVGLAAAHSAQLLGASTVIVGDLNEDRLAQARSFGCETVN 250
|||||||||||||||||||||||||||||||||||.||.|||||||||:|
BPUM_2355___y 196 GSTVYIAGAGPVGLAAAHSAQLLGASTVIVGDLNEQRLEQARSFGCETIN 245
BSNT_06175___ 251 VQKHDRLGEQIEQILGEPTVDAAVDCVGFEASGHGNQGEAPAAVLNSIMD 300
::||||:||||..|||||.||.|||||||||||||:||||||.|||:|||
BPUM_2355___y 246 LRKHDRIGEQITNILGEPEVDCAVDCVGFEASGHGDQGEAPATVLNTIMD 295
BSNT_06175___ 301 VTQVGGSLGIPGLYVTEDPGAKDADAKTGSLKIRFGLGWAKAHTFVTGQT 350
:|:|||.||||||||||||||.|||||.||||:|.|||||||||||||||
BPUM_2355___y 296 ITKVGGKLGIPGLYVTEDPGAVDADAKVGSLKVRIGLGWAKAHTFVTGQT 345
BSNT_06175___ 351 PAMTYNRNLMKAILSGRAQIAKAVNATVISLDDAPKGYSDFDKGAAKKFV 400
|.|.|:|:|||:|||||||||||||||||:||.||:||||||.|.|||||
BPUM_2355___y 346 PVMQYHRSLMKSILSGRAQIAKAVNATVINLDQAPQGYSDFDSGVAKKFV 395
BSNT_06175___ 401 IDPHGTLK- 408
|||||.:.
BPUM_2355___y 396 IDPHGMISR 404
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.