Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06175 and BPUM_2355

See Amino acid alignment / Visit BSNT_06175 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:38
# Commandline: needle
#    -asequence dna-align/BSNT_06175___yycR.1.24716.seq
#    -bsequence dna-align/BPUM_2355___yycR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06175___yycR-BPUM_2355___yycR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06175___yycR-BPUM_2355___yycR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06175___yycR
# 2: BPUM_2355___yycR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1245
# Identity:     909/1245 (73.0%)
# Similarity:   909/1245 (73.0%)
# Gaps:          48/1245 ( 3.9%)
# Score: 3221.5
# 
#
#=======================================

BSNT_06175___      1 ATGGGAGGAATGGCGTTGACAGGAAACAAAGCGGTTGTGTACAAAGGCAA     50
                              |||.||      ||||||||||..||.||.||.|||||...
BPUM_2355___y      1 ---------ATGTCG------GGAAACAAAGGTGTCGTTTATAAAGGAGC     35

BSNT_06175___     51 AGGGACTGTAGCGGTGGAGGATATCGGTTATCCGGAGTTAATCTTGAGGG    100
                     |||.|.||||||.||.||||||||.||.||.||.||.||.||.||.||.|
BPUM_2355___y     36 AGGAAATGTAGCAGTTGAGGATATTGGATACCCTGATTTGATTTTAAGAG     85

BSNT_06175___    101 ACGGGCCCGGCGTCCCGAAGGCGAATGTGAATCGAAAATGTGAGCATGGG    150
                     |.||.||.||.||.|||||.||.||||||...||.||||||||||||||.
BPUM_2355___y     86 ATGGCCCGGGTGTACCGAAAGCCAATGTGGGGCGCAAATGTGAGCATGGC    135

BSNT_06175___    151 GTTATTCTCAAAGTCATTACAACCAACATTTGCGGAAGCGACCAGCATAT    200
                     ||.|||.|.|||||..|.||.||.||.|||||||||||.||||||||.||
BPUM_2355___y    136 GTCATTTTAAAAGTAGTGACGACGAATATTTGCGGAAGTGACCAGCACAT    185

BSNT_06175___    201 GGTCAGAGGCCGCACAACGGCGCCTGAAGGCTTGGTGCTCGGGCATGAAA    250
                     |||.|||||.||.||.||.|||||.|.|||..|.||.||.||.|||||||
BPUM_2355___y    186 GGTGAGAGGTCGTACGACTGCGCCGGCAGGACTCGTCCTTGGTCATGAAA    235

BSNT_06175___    251 TCACCGGAGAAGTCATTGAAACGGGGCGTGATGTCGAATTTA-TCAAAAA    299
                     |.||.||.||||||.||||....||.||.|||||.||.|||| |||||||
BPUM_2355___y    236 TTACAGGTGAAGTCGTTGAGGTAGGACGAGATGTGGAGTTTATTCAAAAA    285

BSNT_06175___    300 GGGCGATATCGTATCCGTTCCTTTCAATATTGCCTGCGGACGCTGTGTGA    349
                      ||.||..|.||.||.|||||.||.||||||||.||||||||.||.||.|
BPUM_2355___y    286 -GGAGACCTTGTGTCTGTTCCATTTAATATTGCTTGCGGACGATGCGTCA    334

BSNT_06175___    350 TGTGCAA--AACGCAGAAAACGCATGTGTGCCTGAATGTCAATCCGGATC    397
                     ||||.||  ||  ||.|||||.|||||||||.|.|||||.||.|||||.|
BPUM_2355___y    335 TGTGTAAGGAA--CAAAAAACCCATGTGTGCTTAAATGTAAACCCGGACC    382

BSNT_06175___    398 GGCCGGGATCTGCTTACGGCTACGTCGATATGGGCGGCTGGATCGGCGGC    447
                     |.||.||.|||||.||.||.||.||||||||||||||.|||.|.||||||
BPUM_2355___y    383 GTCCAGGCTCTGCCTATGGATATGTCGATATGGGCGGATGGGTTGGCGGC    432

BSNT_06175___    448 CAGTCTGAATACGTCATGGTGCCATACGCTGACTTTCAGCTTTTGGTATT    497
                     ||.||.||.|||||||||||.|||||.||.||.||.|||.|..||..|||
BPUM_2355___y    433 CAATCCGAGTACGTCATGGTACCATATGCAGATTTCCAGTTGCTGAAATT    482

BSNT_06175___    498 CCCTGATAAAGAACAGGCGTTAGAAAAGATTCTCGATTTGACCATGCTGT    547
                     |||.||.|||||.||.|||.|.|||||.||.||.|||.||||.|||||.|
BPUM_2355___y    483 CCCAGACAAAGATCAAGCGATGGAAAAAATACTTGATCTGACAATGCTTT    532

BSNT_06175___    548 CCGACATTTTCCCGACCGGCTTCCATGGAGCTTACACAGCGGGCGTGCAA    597
                     ||||.|||||||||||.||.||.||.||.||.||.||.||.||.||..||
BPUM_2355___y    533 CCGATATTTTCCCGACAGGTTTTCACGGTGCGTATACGGCTGGAGTAAAA    582

BSNT_06175___    598 ACAGGTTCAACCGTTTACATCGCGGGAGCGGGGCCTGTCGG-CTTGGCAG    646
                     .|.|||||||||||.||.||.||.||.||.|||||.||.|| ||| ||.|
BPUM_2355___y    583 CCTGGTTCAACCGTATATATTGCCGGTGCAGGGCCAGTAGGTCTT-GCCG    631

BSNT_06175___    647 CTGCACACTCCGCTCAGCTCCTAGGCGCCTCCACCGTGATTGTCGGCGAT    696
                     |.||.||.||||||||||||||.|||||.||.||.||.|||||.||.|||
BPUM_2355___y    632 CAGCGCATTCCGCTCAGCTCCTTGGCGCTTCTACAGTCATTGTAGGAGAT    681

BSNT_06175___    697 CTGAACGAAGACAGACTGGCACAGGCAAGAAGCTTCGGCTGTGAAACGGT    746
                     .||||.|||.|.||.||||..|||||.||||||||.||||||||.|||.|
BPUM_2355___y    682 TTGAATGAACAAAGGCTGGAGCAGGCCAGAAGCTTTGGCTGTGAGACGAT    731

BSNT_06175___    747 CAACGTGCAAAAACACGACCGCCTCGGCGAGCAAATTGAACAA-ATACTA    795
                     |||..|.|.||||||.||.||..|||||||.|||| |.|.||| ||..||
BPUM_2355___y    732 CAATTTACGAAAACATGATCGAATCGGCGAACAAA-TCACCAACATCTTA    780

BSNT_06175___    796 GGTGAACC-------GACCGTTGATGCCGCAGTGGACTGTGTCGGCTTTG    838
                     ||.||.||       |||.||       ||.||.||.|||||.|||||||
BPUM_2355___y    781 GGAGAGCCAGAAGTAGACTGT-------GCCGTCGATTGTGTTGGCTTTG    823

BSNT_06175___    839 AAGCATCTGGCCACGGCAATCAAGGGGAAGCGCCTGCCGCCGTGCTGAAC    888
                     ||||.||.||.||.||..|||||||.|||||.|||||..||||..|.||.
BPUM_2355___y    824 AAGCTTCAGGTCATGGAGATCAAGGAGAAGCACCTGCAACCGTTTTAAAT    873

BSNT_06175___    889 TCGATCATGGACGTCACCCAGGTCGGAGGCAGCCTCGGCATTCCAGG-CT    937
                     .|.||.|||||..|.|||.|.||.||.||.|..|||||.||.||||| ||
BPUM_2355___y    874 ACAATTATGGATATTACCAAAGTTGGCGGTAAACTCGGAATCCCAGGACT    923

BSNT_06175___    938 TATACGTGACCGAAGATCCCGGCGCAAAGGATGCGGACGCTAAAACAGGC    987
                     | |||||.||.|||||.||.||.|||..||||||.||.||.|||...||.
BPUM_2355___y    924 T-TACGTCACAGAAGACCCTGGTGCAGTGGATGCTGATGCAAAAGTTGGA    972

BSNT_06175___    988 TCACTAAAAATCCGATTCGGACTCGGCTGGGCCAAAGCCCACACCTTCGT   1037
                     |||||.|||.|.|||.|.||||||||||||||.||||||||.|||||.||
BPUM_2355___y    973 TCACTGAAAGTGCGAATTGGACTCGGCTGGGCAAAAGCCCATACCTTTGT   1022

BSNT_06175___   1038 CACCGGACAAACACCTGCCATGACATACAACCGCAATTTGATGAAAGCGA   1087
                     .||.||.|||||.||||.||||..|||..||||||.|.|.||||||.|.|
BPUM_2355___y   1023 GACAGGTCAAACCCCTGTCATGCAATATCACCGCAGTCTAATGAAATCTA   1072

BSNT_06175___   1088 TCCTGAGCGGTAGAGCGCAGATCGCAAAAGCCGTCAACGCCACCGTCATT   1137
                     |..|.|||||..||||.||.|||||.|||||.||.||.||.|||||||||
BPUM_2355___y   1073 TTTTAAGCGGACGAGCACAAATCGCCAAAGCAGTGAATGCAACCGTCATT   1122

BSNT_06175___   1138 TCTCTGGACGACGCGCCAAAAGGCTACAGCGACTTTGACAAAGGCGCAGC   1187
                     ..|||.||..|.||.||..||||.|||||.||||||||...|||.|.|||
BPUM_2355___y   1123 AATCTTGATCAAGCCCCTCAAGGATACAGTGACTTTGATTCAGGTGTAGC   1172

BSNT_06175___   1188 CAAAAAATTCGTCATCGACCCGCATGGGA-CATT----GAAGTAA   1227
                     .||.|||||.|||||.||||||||||||| .|||    ||  |||
BPUM_2355___y   1173 GAAGAAATTTGTCATTGACCCGCATGGGATGATTTCTCGA--TAA   1215


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