Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06175 and BPUM_2355
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:38
# Commandline: needle
# -asequence dna-align/BSNT_06175___yycR.1.24716.seq
# -bsequence dna-align/BPUM_2355___yycR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06175___yycR-BPUM_2355___yycR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06175___yycR-BPUM_2355___yycR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06175___yycR
# 2: BPUM_2355___yycR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1245
# Identity: 909/1245 (73.0%)
# Similarity: 909/1245 (73.0%)
# Gaps: 48/1245 ( 3.9%)
# Score: 3221.5
#
#
#=======================================
BSNT_06175___ 1 ATGGGAGGAATGGCGTTGACAGGAAACAAAGCGGTTGTGTACAAAGGCAA 50
|||.|| ||||||||||..||.||.||.|||||...
BPUM_2355___y 1 ---------ATGTCG------GGAAACAAAGGTGTCGTTTATAAAGGAGC 35
BSNT_06175___ 51 AGGGACTGTAGCGGTGGAGGATATCGGTTATCCGGAGTTAATCTTGAGGG 100
|||.|.||||||.||.||||||||.||.||.||.||.||.||.||.||.|
BPUM_2355___y 36 AGGAAATGTAGCAGTTGAGGATATTGGATACCCTGATTTGATTTTAAGAG 85
BSNT_06175___ 101 ACGGGCCCGGCGTCCCGAAGGCGAATGTGAATCGAAAATGTGAGCATGGG 150
|.||.||.||.||.|||||.||.||||||...||.||||||||||||||.
BPUM_2355___y 86 ATGGCCCGGGTGTACCGAAAGCCAATGTGGGGCGCAAATGTGAGCATGGC 135
BSNT_06175___ 151 GTTATTCTCAAAGTCATTACAACCAACATTTGCGGAAGCGACCAGCATAT 200
||.|||.|.|||||..|.||.||.||.|||||||||||.||||||||.||
BPUM_2355___y 136 GTCATTTTAAAAGTAGTGACGACGAATATTTGCGGAAGTGACCAGCACAT 185
BSNT_06175___ 201 GGTCAGAGGCCGCACAACGGCGCCTGAAGGCTTGGTGCTCGGGCATGAAA 250
|||.|||||.||.||.||.|||||.|.|||..|.||.||.||.|||||||
BPUM_2355___y 186 GGTGAGAGGTCGTACGACTGCGCCGGCAGGACTCGTCCTTGGTCATGAAA 235
BSNT_06175___ 251 TCACCGGAGAAGTCATTGAAACGGGGCGTGATGTCGAATTTA-TCAAAAA 299
|.||.||.||||||.||||....||.||.|||||.||.|||| |||||||
BPUM_2355___y 236 TTACAGGTGAAGTCGTTGAGGTAGGACGAGATGTGGAGTTTATTCAAAAA 285
BSNT_06175___ 300 GGGCGATATCGTATCCGTTCCTTTCAATATTGCCTGCGGACGCTGTGTGA 349
||.||..|.||.||.|||||.||.||||||||.||||||||.||.||.|
BPUM_2355___y 286 -GGAGACCTTGTGTCTGTTCCATTTAATATTGCTTGCGGACGATGCGTCA 334
BSNT_06175___ 350 TGTGCAA--AACGCAGAAAACGCATGTGTGCCTGAATGTCAATCCGGATC 397
||||.|| || ||.|||||.|||||||||.|.|||||.||.|||||.|
BPUM_2355___y 335 TGTGTAAGGAA--CAAAAAACCCATGTGTGCTTAAATGTAAACCCGGACC 382
BSNT_06175___ 398 GGCCGGGATCTGCTTACGGCTACGTCGATATGGGCGGCTGGATCGGCGGC 447
|.||.||.|||||.||.||.||.||||||||||||||.|||.|.||||||
BPUM_2355___y 383 GTCCAGGCTCTGCCTATGGATATGTCGATATGGGCGGATGGGTTGGCGGC 432
BSNT_06175___ 448 CAGTCTGAATACGTCATGGTGCCATACGCTGACTTTCAGCTTTTGGTATT 497
||.||.||.|||||||||||.|||||.||.||.||.|||.|..||..|||
BPUM_2355___y 433 CAATCCGAGTACGTCATGGTACCATATGCAGATTTCCAGTTGCTGAAATT 482
BSNT_06175___ 498 CCCTGATAAAGAACAGGCGTTAGAAAAGATTCTCGATTTGACCATGCTGT 547
|||.||.|||||.||.|||.|.|||||.||.||.|||.||||.|||||.|
BPUM_2355___y 483 CCCAGACAAAGATCAAGCGATGGAAAAAATACTTGATCTGACAATGCTTT 532
BSNT_06175___ 548 CCGACATTTTCCCGACCGGCTTCCATGGAGCTTACACAGCGGGCGTGCAA 597
||||.|||||||||||.||.||.||.||.||.||.||.||.||.||..||
BPUM_2355___y 533 CCGATATTTTCCCGACAGGTTTTCACGGTGCGTATACGGCTGGAGTAAAA 582
BSNT_06175___ 598 ACAGGTTCAACCGTTTACATCGCGGGAGCGGGGCCTGTCGG-CTTGGCAG 646
.|.|||||||||||.||.||.||.||.||.|||||.||.|| ||| ||.|
BPUM_2355___y 583 CCTGGTTCAACCGTATATATTGCCGGTGCAGGGCCAGTAGGTCTT-GCCG 631
BSNT_06175___ 647 CTGCACACTCCGCTCAGCTCCTAGGCGCCTCCACCGTGATTGTCGGCGAT 696
|.||.||.||||||||||||||.|||||.||.||.||.|||||.||.|||
BPUM_2355___y 632 CAGCGCATTCCGCTCAGCTCCTTGGCGCTTCTACAGTCATTGTAGGAGAT 681
BSNT_06175___ 697 CTGAACGAAGACAGACTGGCACAGGCAAGAAGCTTCGGCTGTGAAACGGT 746
.||||.|||.|.||.||||..|||||.||||||||.||||||||.|||.|
BPUM_2355___y 682 TTGAATGAACAAAGGCTGGAGCAGGCCAGAAGCTTTGGCTGTGAGACGAT 731
BSNT_06175___ 747 CAACGTGCAAAAACACGACCGCCTCGGCGAGCAAATTGAACAA-ATACTA 795
|||..|.|.||||||.||.||..|||||||.|||| |.|.||| ||..||
BPUM_2355___y 732 CAATTTACGAAAACATGATCGAATCGGCGAACAAA-TCACCAACATCTTA 780
BSNT_06175___ 796 GGTGAACC-------GACCGTTGATGCCGCAGTGGACTGTGTCGGCTTTG 838
||.||.|| |||.|| ||.||.||.|||||.|||||||
BPUM_2355___y 781 GGAGAGCCAGAAGTAGACTGT-------GCCGTCGATTGTGTTGGCTTTG 823
BSNT_06175___ 839 AAGCATCTGGCCACGGCAATCAAGGGGAAGCGCCTGCCGCCGTGCTGAAC 888
||||.||.||.||.||..|||||||.|||||.|||||..||||..|.||.
BPUM_2355___y 824 AAGCTTCAGGTCATGGAGATCAAGGAGAAGCACCTGCAACCGTTTTAAAT 873
BSNT_06175___ 889 TCGATCATGGACGTCACCCAGGTCGGAGGCAGCCTCGGCATTCCAGG-CT 937
.|.||.|||||..|.|||.|.||.||.||.|..|||||.||.||||| ||
BPUM_2355___y 874 ACAATTATGGATATTACCAAAGTTGGCGGTAAACTCGGAATCCCAGGACT 923
BSNT_06175___ 938 TATACGTGACCGAAGATCCCGGCGCAAAGGATGCGGACGCTAAAACAGGC 987
| |||||.||.|||||.||.||.|||..||||||.||.||.|||...||.
BPUM_2355___y 924 T-TACGTCACAGAAGACCCTGGTGCAGTGGATGCTGATGCAAAAGTTGGA 972
BSNT_06175___ 988 TCACTAAAAATCCGATTCGGACTCGGCTGGGCCAAAGCCCACACCTTCGT 1037
|||||.|||.|.|||.|.||||||||||||||.||||||||.|||||.||
BPUM_2355___y 973 TCACTGAAAGTGCGAATTGGACTCGGCTGGGCAAAAGCCCATACCTTTGT 1022
BSNT_06175___ 1038 CACCGGACAAACACCTGCCATGACATACAACCGCAATTTGATGAAAGCGA 1087
.||.||.|||||.||||.||||..|||..||||||.|.|.||||||.|.|
BPUM_2355___y 1023 GACAGGTCAAACCCCTGTCATGCAATATCACCGCAGTCTAATGAAATCTA 1072
BSNT_06175___ 1088 TCCTGAGCGGTAGAGCGCAGATCGCAAAAGCCGTCAACGCCACCGTCATT 1137
|..|.|||||..||||.||.|||||.|||||.||.||.||.|||||||||
BPUM_2355___y 1073 TTTTAAGCGGACGAGCACAAATCGCCAAAGCAGTGAATGCAACCGTCATT 1122
BSNT_06175___ 1138 TCTCTGGACGACGCGCCAAAAGGCTACAGCGACTTTGACAAAGGCGCAGC 1187
..|||.||..|.||.||..||||.|||||.||||||||...|||.|.|||
BPUM_2355___y 1123 AATCTTGATCAAGCCCCTCAAGGATACAGTGACTTTGATTCAGGTGTAGC 1172
BSNT_06175___ 1188 CAAAAAATTCGTCATCGACCCGCATGGGA-CATT----GAAGTAA 1227
.||.|||||.|||||.||||||||||||| .||| || |||
BPUM_2355___y 1173 GAAGAAATTTGTCATTGACCCGCATGGGATGATTTCTCGA--TAA 1215
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