Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05516 and BPUM_2352

See DNA alignment / Visit BSNT_05516 in genome browser / Return to Orthologue table

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:08
# Commandline: needle
#    -asequence pep-align/BSNT_05516___ywqM.1.24716.seq
#    -bsequence pep-align/BPUM_2352___ywqM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05516___ywqM-BPUM_2352___ywqM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05516___ywqM-BPUM_2352___ywqM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05516___ywqM
# 2: BPUM_2352___ywqM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 301
# Identity:     143/301 (47.5%)
# Similarity:   203/301 (67.4%)
# Gaps:          12/301 ( 4.0%)
# Score: 679.5
# 
#
#=======================================

BSNT_05516___      1 MELKQLITFITAAEHVNFTLTAKMLNYAQSSVTSQIKSLEEEIGTPLFER     50
                     ||:|||:.|.||::.:|||.||:||.|||||:|:.|.:||||:|||||||
BPUM_2352___y      1 MEIKQLMMFQTASKVLNFTKTAQMLGYAQSSITANIVALEEELGTPLFER     50

BSNT_05516___     51 LGKRLILTEAGKTFKSYAQKIIALTEEAKMAANQVRETTGTLKIGATESQ    100
                     ||||:||||||:.|:.|..:|:.||.||..|...:.|.:|.|:|.|:|:|
BPUM_2352___y     51 LGKRVILTEAGRQFQHYTDEILGLTGEALEAVGGMNEPSGILRICASETQ    100

BSNT_05516___    101 CTYRLPPIIKEFKQAFPQVKLIFKPYISNEQAKEQLLQGQLDITFILDVN    150
                     ||||||.|:.:|:..:|:|:|||:|.|:.:.....||:||:|:. :|.:|
BPUM_2352___y    101 CTYRLPHILTDFQTKYPKVELIFRPGIAEKDVLTLLLEGQIDVA-LLSMN    149

BSNT_05516___    151 RMEDA-LHVESLIQDEIKMVAANDHPFPADLPVTLKDLQNETLLLTEDGC    199
                     .:..: |.|:.|..:.:.:|....:|......|...|:..:.|||||: |
BPUM_2352___y    150 PVVSSHLLVKELKDEPMAIVCCPTNPLSKKQKVYPIDINEQRLLLTEE-C    198

BSNT_05516___    200 SYRTLFENNLHDSGVYP-NKLEFVSIEAIKQCVMAGLGIGILPEMTVKDD    248
                     .||..||::|..:|..| :|||...:||||:||||||||.:|||::||.:
BPUM_2352___y    199 DYRYAFEHSLTQAGAKPRSKLELADVEAIKKCVMAGLGIAVLPEISVKKE    248

BSNT_05516___    249 IAAGRMKELNWQSDCPVFT---QLAWHKDKWMSAPLKAFIDLTRKTFK--    293
                     ||.|.:.::||...|  |:   ||.|||:||||..||||:|||.....  
BPUM_2352___y    249 IAEGNIIKINWMDPC--FSTKIQLFWHKNKWMSPALKAFVDLTEDYILLN    296

BSNT_05516___    293 -    293
                      
BPUM_2352___y    297 G    297


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