Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05516 and BPUM_2352
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_05516___ywqM.1.24716.seq
# -bsequence dna-align/BPUM_2352___ywqM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05516___ywqM-BPUM_2352___ywqM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05516___ywqM-BPUM_2352___ywqM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05516___ywqM
# 2: BPUM_2352___ywqM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1028
# Identity: 560/1028 (54.5%)
# Similarity: 560/1028 (54.5%)
# Gaps: 280/1028 (27.2%)
# Score: 1347.5
#
#
#=======================================
BSNT_05516___ 1 GTGGAATTGAAGCAGCTGATCACCTTTATT----ACGGCGGCAGAA-CAT 45
.||||..|.||.||.|||||.| |.|| ||.||..||.|| .||
BPUM_2352___y 1 TTGGAGATCAAACAACTGATGA----TGTTCCAAACAGCATCAAAAGTAT 46
BSNT_05516___ 46 GTAAACTTCACCCTAACCGCCAAAATGCTTAATTATGCACAATCAAGCGT 95
|||||||.||...|||.||..||||||||..||||||.|||||.|||
BPUM_2352___y 47 -TAAACTTTACAAAAACTGCACAAATGCTTGGTTATGCTCAATCTAGC-- 93
BSNT_05516___ 96 TACCTCTCAGATCAAAT-------CACTTGAAGAAGAAATTGGGACGCCT 138
.|||.|.||||| ||.|.||||||||..|.||.||||||
BPUM_2352___y 94 -----ATCACAGCAAATATTGTGGCATTGGAAGAAGAGCTAGGAACGCCT 138
BSNT_05516___ 139 TTATTTGAACGGCTCGGCAAGCGGCTTATCTTGACAGAAGCAGG-AAAAA 187
.||||||||.||||.||.||..||.|.|||||.||||||||.|| |.|.|
BPUM_2352___y 139 CTATTTGAAAGGCTTGGAAAAAGGGTGATCTTAACAGAAGCTGGCAGACA 188
BSNT_05516___ 188 CGTTCAA-ATCTTATGCGCAGAAGATCATT----GCGTTAACAGAAGAAG 232
..||||| ||..|| ||||.|| .||| || |||||||..||||
BPUM_2352___y 189 ATTTCAACATTATA----CAGATGA-AATTTTAGGC-TTAACAGGGGAAG 232
BSNT_05516___ 233 CGAAAAT----GGCCG---------CAAAT----CAAGTAAGAGAAACAA 265
| || |||.| ..||| |||||
BPUM_2352___y 233 C----ATTAGAGGCTGTTGGTGGGATGAATGAGCCAAGT----------- 267
BSNT_05516___ 266 CCGGAACCTTAAAAATCGGGGCGACGGAAAGCCAGTGCACATACCGCCTG 315
||.|..||.|.|||..|.||..|.||||..||.||.||.|||||.||.
BPUM_2352___y 268 --GGCATTTTGAGAATATGTGCATCTGAAACACAATGTACCTACCGGCTT 315
BSNT_05516___ 316 CCCCCTATCATAAAAGAATTTAAACAGGCTTT-----------TCCCCAA 354
|| |||| ||||.|||.|.|||| |||..||
BPUM_2352___y 316 CC-----TCAT------ATTTTAACGGACTTTCAAACAAAATATCCAAAA 354
BSNT_05516___ 355 GTAAAGCTCATATTCAAACCATATATCTCCAATGAACAAGCG--AAAG-- 400
||..|.||.|||||| |.||.|.||| .|||| ||||
BPUM_2352___y 355 GTGGAACTGATATTC-----------CGCCCAGGAA-TAGCGGAAAAGGA 392
BSNT_05516___ 401 ------AACAGCTCTTAC---AGGGCCAGCTTGATATCACCTT------- 434
||| .||.|||| |.||.||..|||||.||.||||
BPUM_2352___y 393 TGTCTTAAC-TCTATTACTTGAAGGACAAATTGATGTCGCCTTATTATCC 441
BSNT_05516___ 435 ---CATCTTGGA-----------------TGTAAACCGGA--TGGAAGAC 462
.|||.||.| |||||| .|| |..|||||
BPUM_2352___y 442 ATGAATCCTGTAGTATCCTCACATTTACTTGTAAA--AGAATTAAAAGAC 489
BSNT_05516___ 463 GCAC---TGCACGTTGAATCTTTGATTCAGGATGAGATCAAAATGGTGGC 509
|.|| ||..|.|||.|| ||
BPUM_2352___y 490 GAACCGATGGCCATTGTAT-----------------------------GC 510
BSNT_05516___ 510 TGCTAATGACC-----ATCCTTTTCCTGCGGATTTACCAGTAA------- 547
||| || |||||| ||.|.|...|.||..||
BPUM_2352___y 511 TGC------CCAACAAATCCTT----TGAGCAAAAAACAAAAAGTATATC 550
BSNT_05516___ 548 -CATTGAAGGATCTTCAAAACGA--AACTCTT-CTGCTGACAGAGGACGG 593
|||||| |..|||||| |||..|| .||.|.||.||.||..|
BPUM_2352___y 551 CCATTGA-------TATAAACGAACAACGATTGTTGTTAACTGAAGAATG 593
BSNT_05516___ 594 CTGCTCGTACCGC-ACGCTCTTTGAGAACA---ATTTGCATGACTCCGGT 639
||.| ||.||| |||| ||| .||||| |||..|| .|..|.|||
BPUM_2352___y 594 -TGAT--TATCGCTACGC-CTT--CGAACACTCATTAACA-CAGGCAGGT 636
BSNT_05516___ 640 GTCTATCCTAAC--------AAATTGGAATTCGTCAGCA----TAGAAGC 677
| |..||| |||.|.||||| |||| |||||||
BPUM_2352___y 637 G-----CAAAACCAAGAAGTAAACTAGAATT----AGCAGATGTAGAAGC 677
BSNT_05516___ 678 CATCAAACAATGCGTGATGGCCGGACTTGGGATTGGAATCT----TGCCT 723
|||.|||.||||.||.|||||.|| |||.|||.|.| || |.|||
BPUM_2352___y 678 CATAAAAAAATGTGTAATGGCAGG-CTTAGGAATCG---CTGTACTTCCT 723
BSNT_05516___ 724 GAAATGACAGTAAAAGATGATATTGCAGCAGGCCGGATGAAAGAACTCAA 773
|||||..|.||||||.|.||.||.||||.||||...||.|...||.||||
BPUM_2352___y 724 GAAATTTCTGTAAAAAAAGAAATAGCAGAAGGCAATATCATCAAAATCAA 773
BSNT_05516___ 774 TTGGCAGAGCGATTG-CCCCGTTTTC---------ACTCAATTAGCATGG 813
||| |||.| ||||..|||| |.||||.||...|||
BPUM_2352___y 774 TTG-------GATGGACCCCTGTTTCTCTACGAAGATTCAACTATTTTGG 816
BSNT_05516___ 814 CATAAGGACAAGTGGATGTCTGCGCCATTAAAGGCTTTTATCGATTTGAC 863
|||||..||||.||||||||..|..|.||||||||.|||.|.|||||.||
BPUM_2352___y 817 CATAAAAACAAATGGATGTCCCCTGCTTTAAAGGCATTTGTGGATTTAAC 866
BSNT_05516___ 864 A-CGGA----AAACATTCAAA----TAA 882
| .||| |..|.||.||| |||
BPUM_2352___y 867 AGAGGATTATATCCTTTTAAATGGTTAA 894
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