Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03838 and BPUM_2308
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence pep-align/BSNT_03838___rapH.1.24716.seq
# -bsequence pep-align/BPUM_2308___rapA4.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03838___rapH-BPUM_2308___rapA4.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03838___rapH-BPUM_2308___rapA4.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03838___rapH
# 2: BPUM_2308___rapA4
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 406
# Identity: 204/406 (50.2%)
# Similarity: 284/406 (70.0%)
# Gaps: 34/406 ( 8.4%)
# Score: 1058.5
#
#
#=======================================
BSNT_03838___ 1 ------------------------------MNPVLSSSEVGVKINEWYKM 20
|..|| ||.||:||||||:|
BPUM_2308___r 1 MFAVSLRCLAVKKRAKICNIRPKRKGFFRNMGKVL-SSHVGMKINEWYRM 49
BSNT_03838___ 21 IRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPV 70
|||||||||||||||||.||:|||||::||||:.||.||||:||||:.|
BPUM_2308___r 50 IRQFSVPDAEILKAEVEAEIERMEEDQHLLIYYQLMCFRHQIMLDYIHP- 98
BSNT_03838___ 71 TTRIRP-TIEELLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIY 119
::.:| ::..|::|||.||..:|.:|.||..|||||:||.:|:|::|:.
BPUM_2308___r 99 -SKYQPFSVSNLVDKIENSNHELSDMLHYYHAFFRGMHEFSQKEYLEAVK 147
BSNT_03838___ 120 YYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHHVKQALDIYN 169
|||.|||||..|.|:||:||||||:|||||.|||:||||||:.:||:||:
BPUM_2308___r 148 YYRVAEKQLSMVFDDIEQAEFHFKVAEAYYIMKQTHVSMHHILKALEIYD 197
BSNT_03838___ 170 QYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLIS 219
|::.|.:|.:||:|||||||.|.|..:::.|||:||.:|:.::::.|:.|
BPUM_2308___r 198 QHDAYSIRIIQCLFVISGNYQDLKRKDRALPHLKKAKQLASQIDHPRIYS 247
BSNT_03838___ 220 SALYNLGTNFADSGDYEQAEVYIKQAVEITEKEKLTNLPHSLFSYAKILF 269
|||||||..:.:.|..|:||.|:.::.||..||:|..|||:|::.||:||
BPUM_2308___r 248 SALYNLGKCYGELGYLEEAERYLTESAEIACKEQLPTLPHTLYTLAKLLF 297
BSNT_03838___ 270 KQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKT 319
:|.:...|.::.:.|..||....|:||..:..||:||||..::::.:.||
BPUM_2308___r 298 RQNEQVAACRILEDGKLAAKKHEDQLFCHMFEYLDALYVQEMNEEQLQKT 347
BSNT_03838___ 320 IEYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRG 369
|:||||...|||||||:.|.|.|...|::::.|..|:||:|..|.|||.|
BPUM_2308___r 348 IDYLEKLSLYSYIEDISLEIATALEASQQYQKSNQYYQKLLWAQNQIQEG 397
BSNT_03838___ 370 ECLYDF 375
||||:|
BPUM_2308___r 398 ECLYEF 403
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