Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03838 and BPUM_2308
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_03838___rapH.1.24716.seq
# -bsequence dna-align/BPUM_2308___rapA4.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03838___rapH-BPUM_2308___rapA4.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03838___rapH-BPUM_2308___rapA4.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03838___rapH
# 2: BPUM_2308___rapA4
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1348
# Identity: 740/1348 (54.9%)
# Similarity: 740/1348 (54.9%)
# Gaps: 356/1348 (26.4%)
# Score: 1924.0
#
#
#=======================================
BSNT_03838___ 0 -------------------------------------------------- 0
BPUM_2308___r 1 ATGTTTGCGGTTTCTTTGCGGTGCTTGGCGGTCAAGAAGCGTGCTAAAAT 50
BSNT_03838___ 1 -------------------------------------------GTGAATC 7
|.|||
BPUM_2308___r 51 ATGTAATATTAGACCGAAAAGGAAGGGGTTTTTTCGGAACATGGGGAA-- 98
BSNT_03838___ 8 CGGTT-TTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAA 56
|||| || ||.|||.|.||.||..|.||.||.||||||||||||..
BPUM_2308___r 99 -GGTTCTT----TCTTCACATGTAGGTATGAAAATTAATGAATGGTATCG 143
BSNT_03838___ 57 AATGATACGTCAATTTAGTGTCCCGGATGCAGAGATTTTAAAGGCAGAGG 106
|||||||||.||.||.|||||.||.|||||.||.||..|.||.|||||.|
BPUM_2308___r 144 AATGATACGGCAGTTCAGTGTTCCAGATGCGGAAATCCTGAAAGCAGAAG 193
BSNT_03838___ 107 TCG-AGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTA 155
|.| ||| .|||||..||||||||||.||.||..||.|||||||.|||||
BPUM_2308___r 194 TAGAAGC-GGAAATTGAACGGATGGAAGAGGACCAGCATTTACTGATTTA 242
BSNT_03838___ 156 CTTCTC--CTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGA 203
||.|| | |.|||...||.||.||.|||.|||||.|.||.|||.| |
BPUM_2308___r 243 -TTATCAGC-TCATGTGTTTTCGGCACCAGATCATGCTTGACTATAT--A 288
BSNT_03838___ 204 -ACCCGT-AACGACACGTATAAGACCAAC--TATTGAGGAACT--TCTT- 246
||||.| || ||.|.|||| |..|.||.|.|| ||||
BPUM_2308___r 289 CACCCTTCAA----------AATATCAACCTTTCTCAGTATCTAATCTTG 328
BSNT_03838___ 247 --GAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTAT 294
||.|||||.||.|..||.|||.|.|...||||||...||.| |.||
BPUM_2308___r 329 TCGATAAAATCGAAAACTCCAATCATGAGTTATCTGATATGCT---GCAT 375
BSNT_03838___ 295 TATT-CTCTG---TTTTTCAGAGGGATGTACGAGTTT-GATAAGAAGCAA 339
|||| |..|| |||||| |.||.|||.|.|||||| |..||.||| ||
BPUM_2308___r 376 TATTACCATGCATTTTTTC-GTGGCATGCATGAGTTTAGTCAAAAAG-AA 423
BSNT_03838___ 340 TACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACA 389
||..|..||||..||.|.|||||..|||..||.|||||.|||| |.|.||
BPUM_2308___r 424 TATTTAGAAGCCGTCAAATATTACCGAGTGGCAGAAAAACAGC-TGTCCA 472
BSNT_03838___ 390 T-GTCCCTGATGAGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAA 438
| ||...||||||.||.||...|||.||||||||||||||..||||.|||
BPUM_2308___r 473 TGGTATTTGATGATATTGAGCAGGCTGAGTTTCATTTTAAAGTAGCAGAA 522
BSNT_03838___ 439 GCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCACGTTAAACA 488
||.||.|||..|||||||||||..|||||.||.||||||||..||..|.|
BPUM_2308___r 523 GCCTACTATATTATGAAGCAAACGCATGTCTCGATGCATCATATTTTAAA 572
BSNT_03838___ 489 AGCGTTGGATATTTATAATCAATATGAACTTTAT--AAGGTGCGAAAAGT 536
.|||.||||.||.||..||||..||||...|||| || |.||.|...|
BPUM_2308___r 573 GGCGCTGGAAATATACGATCAGCATGATGCTTATTCAA--TTCGCATCAT 620
BSNT_03838___ 537 TCAATGTATGTTTGTTATCTCAGGGAATTATACTGATTTTAAACATTACG 586
|||.||..|||||||.||||||||.||.|||...|||||.|| |||
BPUM_2308___r 621 TCAGTGCCTGTTTGTGATCTCAGGAAACTATCAAGATTTAAA-----ACG 665
BSNT_03838___ 587 AAAAAA---GTCA--GCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGG 631
||||.| |.|| |||.|||.|..||||||||..|.||
BPUM_2308___r 666 AAAAGACCGGGCACTGCCTCATTTAAAAAAGGCAAAACAG---------- 705
BSNT_03838___ 632 AATTGAATAACAAAAGGTT--------GAT---TAGTTCTGCACTATATA 670
.|.|.||.|||||..|.| ||| .|||||.||.||.||||
BPUM_2308___r 706 -CTCGCATCACAAATCGATCACCCGCGGATATACAGTTCAGCGCTTTATA 754
BSNT_03838___ 671 ATTTAGGCACTAATTTTGCTGACAGTGGTGATTAC-GAGCAGGCGGAAGT 719
||||.||.| |||.|| .|||.|| || |.||
BPUM_2308___r 755 ATTTGGGGA--AATGTT-------ATGGGGA--ACTGGGC---------- 783
BSNT_03838___ 720 ATACATAAAGCAAGCAG-----TGGAGATT--ACAGAA------------ 750
|||.|..||.|||||| | ||| ||||||
BPUM_2308___r 784 -TACCTTGAGGAAGCAGAACGCT----ATTTAACAGAATCGGCAGAAATT 828
BSNT_03838___ 751 ------AAAGA-AAAGCTCACAAACTTGCCACAT--TCTTTATTTTCTTA 791
||||| .||..||.||..||| |||||| .||.|||...||
BPUM_2308___r 829 GCCTGTAAAGAGCAACTTCCCACGCTT-CCACATACGCTCTATACGCT-- 875
BSNT_03838___ 792 TGCAAAAATCCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAA 841
.||||||.|.|||||||.|| |||||||| ||||||
BPUM_2308___r 876 GGCAAAACTACTTTTTAGAC-----AAAATGAA----------CAAGTA- 909
BSNT_03838___ 842 GTAAGAAAGGTTTGTCAGCA----GCTCTTTATCAAGGTG----ATGAGC 883
.||||| ||...||| .|||.|| ||.|||
BPUM_2308___r 910 --------------GCAGCATGCCGCATATTA-GAAGATGGAAAATTAGC 944
BSNT_03838___ 884 TTTTCGCAAA-----ATTA----CAG------------------GGATAT 906
| ||||| ||.| ||| |..|||
BPUM_2308___r 945 T----GCAAAGAAGCATGAAGACCAGCTGTTCTGTCATATGTTTGAGTAT 990
BSNT_03838___ 907 TTAAATGCTCTTTATGTCGATGCAGTG---GACCAACAAGGTGTTAATAA 953
.||.|||||.|.|||||..|.|.|.|| ||..||||| .|..|.||
BPUM_2308___r 991 CTAGATGCTTTATATGTTCAAGAAATGAATGAAGAACAA---CTGCAAAA 1037
BSNT_03838___ 954 AACCATAGAATACTTAGAAAAAAATAAGAACTAT--TCATATATTGA--- 998
||||||.||.||.||.||||||..|| ..|||| ||.|||||.||
BPUM_2308___r 1038 AACCATTGATTATTTGGAAAAACTTA--GCCTATACTCTTATATAGAGGA 1085
BSNT_03838___ 999 ---------AGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAA 1039
|||.||||| || ||||| ||| |.|..|||..
BPUM_2308___r 1086 TATCTCACTAGAAATTGC------GA---CAGCT--TTA-GAAGCCTCTC 1123
BSNT_03838___ 1040 AAGAATTTGAAACA----TCCTATGTATATCATCAGAAA-----ATGCTT 1080
||.||| |.|| |||.|....|||.|||||||| |||
BPUM_2308___r 1124 AACAAT----ACCAGAAGTCCAACCAGTATTATCAGAAATTATTATG--- 1166
BSNT_03838___ 1081 GAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATGACTTTTAA 1128
|.||||||..|||||.|||...|||||.||.||||||||.||.|||
BPUM_2308___r 1167 --GGCTCAAAATCAAATCCAAGAAGGAGAGTGTCTGTATGAATTCTAA 1212
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