Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03732 and BPUM_2228
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence pep-align/BSNT_03732___pbpA.1.24716.seq
# -bsequence pep-align/BPUM_2228___pbpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03732___pbpA-BPUM_2228___pbpA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03732___pbpA-BPUM_2228___pbpA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03732___pbpA
# 2: BPUM_2228___pbpA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 739
# Identity: 502/739 (67.9%)
# Similarity: 596/739 (80.6%)
# Gaps: 29/739 ( 3.9%)
# Score: 2616.5
#
#
#=======================================
BSNT_03732___ 1 ---------------------MRRNKPKKQNHKEKKKSLPIRLNILFLAA 29
:.|||..|::.||.:|:||:|||:|||||
BPUM_2228___p 1 MMMAPFIHKKGCHFFLDRKGDVMRNKKSKKDAKEGRKTLPLRLNLLFLAA 50
BSNT_03732___ 30 FVIFTWIIVELGIKQIVQGDDYKNQANKQEQSEVSSAVPRGKIYDRNFNA 79
|:|||.::|.||..|||.|:|||.||.|||...||||.|||||||||:|.
BPUM_2228___p 51 FIIFTGVVVRLGFVQIVNGEDYKKQAEKQEDVNVSSAAPRGKIYDRNYNT 100
BSNT_03732___ 80 IVTNKALNAITYTRSKSTTQEQRLKIAKKLSDMIKVDTKKVTERDKKDYW 129
||:|||||||||||:.:|:||:|||:|.||:|||.|.|||:|:|||||:|
BPUM_2228___p 101 IVSNKALNAITYTRTSTTSQEERLKVATKLADMIHVSTKKITDRDKKDFW 150
BSNT_03732___ 130 ILTRPKEAKKLISSKERQQVEDKKISDDDLYQLQLKRITDKQLNELTDKD 179
|||.|.|||:|: .||.:...|.|::||.||:|||||||||:||:||.||
BPUM_2228___p 151 ILTHPNEAKELV-QKESELKGDDKVADDKLYELQLKRITDKELNQLTKKD 199
BSNT_03732___ 180 MQILAIKRRMDSGYALTPQYIKNEDVSAKEMAVVSEHLDELPGVDVTSDW 229
:|:|||||:||:|||||||:|||:||...|:|.||||||||||||||:||
BPUM_2228___p 200 LQVLAIKRQMDAGYALTPQFIKNDDVKPSEIAYVSEHLDELPGVDVTTDW 249
BSNT_03732___ 230 EREYPYKNLLRSVLGSVSSSNEGLPSNLLDHYLSLGYSRNDRVGKSYLEY 279
.|.||||.||||:|||||||:||||.:||:||||||||||||||||||||
BPUM_2228___p 250 SRSYPYKGLLRSMLGSVSSSDEGLPQSLLEHYLSLGYSRNDRVGKSYLEY 299
BSNT_03732___ 280 QYESLLQGQKAKVENITDSKGNVTGTKTVSEGKAGKDLVLTIDIDLQKSV 329
|||.:|||||.|.::.||.:||||.:|.::|||:||||||||||.|||:|
BPUM_2228___p 300 QYEDVLQGQKEKEQSTTDKEGNVTSSKVLTEGKSGKDLVLTIDIQLQKAV 349
BSNT_03732___ 330 EKIIEKKLKAAKARPSTELLDRAFVVMMDPRNGEVLTMAGKQIKRENGAY 379
||||||.||:||.|..||||||||||||||||||||::|||||..:||.|
BPUM_2228___p 350 EKIIEKNLKSAKQRGGTELLDRAFVVMMDPRNGEVLSVAGKQISNKNGKY 399
BSNT_03732___ 380 KFDDYALGAMTSSYAMGSAVKGATVLTGLQTGAINLNTVFKDEPLYIGQD 429
||||||||.|||||||||||||||||||.:||.|::.:...||||||.|.
BPUM_2228___p 400 KFDDYALGTMTSSYAMGSAVKGATVLTGYKTGVIHIGSTQYDEPLYIAQS 449
BSNT_03732___ 430 KRGKKSWQNLGPVGIQTALEKSSNVFMFKTAIAVGKGEYKPHQALPLDTS 479
. .|||:||:|.:...||||:||||:|||||||||||||:.:|.||:|..
BPUM_2228___p 450 P-PKKSYQNMGLINDLTALERSSNVYMFKTAIAVGKGEYRKNQPLPIDPK 498
BSNT_03732___ 480 AFDTFRNYFSQFGLGVKTGIDLPNEMTGYKGTSRLSGFLLDFAIGQYDTY 529
||||||..||:||||||||||||||.|||:|||..||.|||:|||||||:
BPUM_2228___p 499 AFDTFRYNFSKFGLGVKTGIDLPNEATGYRGTSTQSGLLLDYAIGQYDTF 548
BSNT_03732___ 530 TPLELAQYVSTIANGGYRMKPQLVKEVRDSNAKKGIGAVVDSVQPEVLNK 579
|||::||||||:||||||::||||||||:.:.::|||||.:||:|:||||
BPUM_2228___p 549 TPLQMAQYVSTVANGGYRLRPQLVKEVREPDPQRGIGAVTESVKPDVLNK 598
BSNT_03732___ 580 VDMKSSYIEEVQAGFRRVA--TKGTAAGQLASASYKPAAKTGTAQSFYDG 627
:||.|..|:.||.||:.|. .:|||.....:..|.||.|||||||||||
BPUM_2228___p 599 LDMTSDQIKRVQQGFKLVMQNPRGTAYSNFGNKKYNPAGKTGTAQSFYDG 648
BSNT_03732___ 628 PDKSKTGTDTYNTTLVAYAPADNPEIAISVVVPWTYIDYNQRYSITNEIG 677
|.|||.||.||||||||||||||||:||||||||.|.||||||.|||:||
BPUM_2228___p 649 PIKSKRGTPTYNTTLVAYAPADNPEVAISVVVPWVYQDYNQRYPITNDIG 698
BSNT_03732___ 678 REVMDKYFELKSKQDKEDTQQKNKDKIEENAENTTSSDN 716
.:|:||||||||||:..|||.|||:|||..||...
BPUM_2228___p 699 EQVLDKYFELKSKQESNDTQAKNKNKIENEAETND---- 733
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