Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_03732 and BPUM_2228

See DNA alignment / Visit BSNT_03732 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:15
# Commandline: needle
#    -asequence pep-align/BSNT_03732___pbpA.1.24716.seq
#    -bsequence pep-align/BPUM_2228___pbpA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03732___pbpA-BPUM_2228___pbpA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03732___pbpA-BPUM_2228___pbpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03732___pbpA
# 2: BPUM_2228___pbpA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 739
# Identity:     502/739 (67.9%)
# Similarity:   596/739 (80.6%)
# Gaps:          29/739 ( 3.9%)
# Score: 2616.5
# 
#
#=======================================

BSNT_03732___      1 ---------------------MRRNKPKKQNHKEKKKSLPIRLNILFLAA     29
                                          :.|||..|::.||.:|:||:|||:|||||
BPUM_2228___p      1 MMMAPFIHKKGCHFFLDRKGDVMRNKKSKKDAKEGRKTLPLRLNLLFLAA     50

BSNT_03732___     30 FVIFTWIIVELGIKQIVQGDDYKNQANKQEQSEVSSAVPRGKIYDRNFNA     79
                     |:|||.::|.||..|||.|:|||.||.|||...||||.|||||||||:|.
BPUM_2228___p     51 FIIFTGVVVRLGFVQIVNGEDYKKQAEKQEDVNVSSAAPRGKIYDRNYNT    100

BSNT_03732___     80 IVTNKALNAITYTRSKSTTQEQRLKIAKKLSDMIKVDTKKVTERDKKDYW    129
                     ||:|||||||||||:.:|:||:|||:|.||:|||.|.|||:|:|||||:|
BPUM_2228___p    101 IVSNKALNAITYTRTSTTSQEERLKVATKLADMIHVSTKKITDRDKKDFW    150

BSNT_03732___    130 ILTRPKEAKKLISSKERQQVEDKKISDDDLYQLQLKRITDKQLNELTDKD    179
                     |||.|.|||:|: .||.:...|.|::||.||:|||||||||:||:||.||
BPUM_2228___p    151 ILTHPNEAKELV-QKESELKGDDKVADDKLYELQLKRITDKELNQLTKKD    199

BSNT_03732___    180 MQILAIKRRMDSGYALTPQYIKNEDVSAKEMAVVSEHLDELPGVDVTSDW    229
                     :|:|||||:||:|||||||:|||:||...|:|.||||||||||||||:||
BPUM_2228___p    200 LQVLAIKRQMDAGYALTPQFIKNDDVKPSEIAYVSEHLDELPGVDVTTDW    249

BSNT_03732___    230 EREYPYKNLLRSVLGSVSSSNEGLPSNLLDHYLSLGYSRNDRVGKSYLEY    279
                     .|.||||.||||:|||||||:||||.:||:||||||||||||||||||||
BPUM_2228___p    250 SRSYPYKGLLRSMLGSVSSSDEGLPQSLLEHYLSLGYSRNDRVGKSYLEY    299

BSNT_03732___    280 QYESLLQGQKAKVENITDSKGNVTGTKTVSEGKAGKDLVLTIDIDLQKSV    329
                     |||.:|||||.|.::.||.:||||.:|.::|||:||||||||||.|||:|
BPUM_2228___p    300 QYEDVLQGQKEKEQSTTDKEGNVTSSKVLTEGKSGKDLVLTIDIQLQKAV    349

BSNT_03732___    330 EKIIEKKLKAAKARPSTELLDRAFVVMMDPRNGEVLTMAGKQIKRENGAY    379
                     ||||||.||:||.|..||||||||||||||||||||::|||||..:||.|
BPUM_2228___p    350 EKIIEKNLKSAKQRGGTELLDRAFVVMMDPRNGEVLSVAGKQISNKNGKY    399

BSNT_03732___    380 KFDDYALGAMTSSYAMGSAVKGATVLTGLQTGAINLNTVFKDEPLYIGQD    429
                     ||||||||.|||||||||||||||||||.:||.|::.:...||||||.|.
BPUM_2228___p    400 KFDDYALGTMTSSYAMGSAVKGATVLTGYKTGVIHIGSTQYDEPLYIAQS    449

BSNT_03732___    430 KRGKKSWQNLGPVGIQTALEKSSNVFMFKTAIAVGKGEYKPHQALPLDTS    479
                     . .|||:||:|.:...||||:||||:|||||||||||||:.:|.||:|..
BPUM_2228___p    450 P-PKKSYQNMGLINDLTALERSSNVYMFKTAIAVGKGEYRKNQPLPIDPK    498

BSNT_03732___    480 AFDTFRNYFSQFGLGVKTGIDLPNEMTGYKGTSRLSGFLLDFAIGQYDTY    529
                     ||||||..||:||||||||||||||.|||:|||..||.|||:|||||||:
BPUM_2228___p    499 AFDTFRYNFSKFGLGVKTGIDLPNEATGYRGTSTQSGLLLDYAIGQYDTF    548

BSNT_03732___    530 TPLELAQYVSTIANGGYRMKPQLVKEVRDSNAKKGIGAVVDSVQPEVLNK    579
                     |||::||||||:||||||::||||||||:.:.::|||||.:||:|:||||
BPUM_2228___p    549 TPLQMAQYVSTVANGGYRLRPQLVKEVREPDPQRGIGAVTESVKPDVLNK    598

BSNT_03732___    580 VDMKSSYIEEVQAGFRRVA--TKGTAAGQLASASYKPAAKTGTAQSFYDG    627
                     :||.|..|:.||.||:.|.  .:|||.....:..|.||.|||||||||||
BPUM_2228___p    599 LDMTSDQIKRVQQGFKLVMQNPRGTAYSNFGNKKYNPAGKTGTAQSFYDG    648

BSNT_03732___    628 PDKSKTGTDTYNTTLVAYAPADNPEIAISVVVPWTYIDYNQRYSITNEIG    677
                     |.|||.||.||||||||||||||||:||||||||.|.||||||.|||:||
BPUM_2228___p    649 PIKSKRGTPTYNTTLVAYAPADNPEVAISVVVPWVYQDYNQRYPITNDIG    698

BSNT_03732___    678 REVMDKYFELKSKQDKEDTQQKNKDKIEENAENTTSSDN    716
                     .:|:||||||||||:..|||.|||:|||..||...    
BPUM_2228___p    699 EQVLDKYFELKSKQESNDTQAKNKNKIENEAETND----    733


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.