Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03732 and BPUM_2228
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_03732___pbpA.1.24716.seq
# -bsequence dna-align/BPUM_2228___pbpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03732___pbpA-BPUM_2228___pbpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03732___pbpA-BPUM_2228___pbpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03732___pbpA
# 2: BPUM_2228___pbpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2336
# Identity: 1545/2336 (66.1%)
# Similarity: 1545/2336 (66.1%)
# Gaps: 319/2336 (13.7%)
# Score: 4873.0
#
#
#=======================================
BSNT_03732___ 0 -------------------------------------------------- 0
BPUM_2228___p 1 ATGATGATGGCACCTTTTATACACAAAAAGGGGTGCCATTTCTTTCTTGA 50
BSNT_03732___ 1 -------------ATGAGGAGAAATAAACCAA-AAAAGCAAAATCATAAA 36
.|||.|||||| ||| ||||||||| |||
BPUM_2228___p 51 TAGAAAAGGTGATGTGATGAGAAA-----CAAGAAAAGCAAA-----AAA 90
BSNT_03732___ 37 GA-GAAAAAGAAG--------TCGCTTCCGATCCGGCTGAATATTTTATT 77
|| |..||.|||| .|.|||||..|||||||||||.|..||||
BPUM_2228___p 91 GACGCGAAGGAAGGGCGCAAAACACTTCCACTCCGGCTGAATTTACTATT 140
BSNT_03732___ 78 TTTAGCTGCCTTTGTTATATTCACCTGG-ATTATTGTGGAACTGGGCAT- 125
|||||||||.|||.||||.||.| |||| .||.||||...|||.|| ||
BPUM_2228___p 141 TTTAGCTGCGTTTATTATTTTTA-CTGGTGTTGTTGTAAGACTCGG-ATT 188
BSNT_03732___ 126 ----CAAGCAGATCGTGCAA-GGCGATGATTACAAAAACCAAGC-GAATA 169
||| ||.|| ||| ||.||.|||||.|||||.||.|| |||.|
BPUM_2228___p 189 TGTACAA----ATTGT-CAATGGAGAAGATTATAAAAAGCAGGCAGAAAA 233
BSNT_03732___ 170 AGCAGGAACAAAGTGAA-GTCAGCTCAGCGGTACCACGCGGGAAAATTTA 218
|..|| |..|.||.|| |||||||||||.|..||.|||||.||||||||
BPUM_2228___p 234 ACAAG--AGGATGTAAATGTCAGCTCAGCTGCTCCGCGCGGAAAAATTTA 281
BSNT_03732___ 219 TGATCGAAACTTTAATGCCATTGTGACAAATAAGGCTTTAAATGCAATCA 268
.||||||||.|.||||.|.|||||.|..|||||.||..|||||||.||.|
BPUM_2228___p 282 CGATCGAAATTATAATACGATTGTCAGCAATAAAGCGCTAAATGCCATTA 331
BSNT_03732___ 269 CATACACGAGA---TCTAAATCGACCACGCAAGAACAGC-GCTTAAAGAT 314
||||.|||||| ||.| ||||..|.||||||.|.| |||.|||| |
BPUM_2228___p 332 CATATACGAGAACCTCGA---CGACTTCACAAGAAGAACGGCTCAAAG-T 377
BSNT_03732___ 315 CGCAAAAAAGCTGTCTGACATGATCAAAGTCGA-TACAAAAAAAGTAACA 363
.||.|.|||..|..|.||.|||||..|.|| || |||.||||||.|.|||
BPUM_2228___p 378 GGCTACAAAATTAGCGGATATGATACATGT-GAGTACGAAAAAAATCACA 426
BSNT_03732___ 364 GAACGGGATAAAAAAGATTATTGGATTTTGACTAGACCGAAAGAAGCGAA 413
||.||.||.||||||||||..||||||||.||....|||||.||||||||
BPUM_2228___p 427 GATCGTGACAAAAAAGATTTCTGGATTTTAACGCATCCGAACGAAGCGAA 476
BSNT_03732___ 414 AAAGCTCATTAGCTCTAAAGAAAGACAGCAGGTTGAA----GACAAAAAA 459
|.||| |.|.||.||||.|| .|||.| ||.|| |||.|.||.
BPUM_2228___p 477 AGAGC----TTGTTCAAAAGGAA-TCAGAA--TTAAAGGGTGACGATAAG 519
BSNT_03732___ 460 ATATCCGATGACGATTTATACCAGCTTCAGCTAAAACGGATTACTGATAA 509
.|..|.|||||..|.|||||..||||||||||.|||||.||.||.||.||
BPUM_2228___p 520 GTCGCTGATGATAAATTATATGAGCTTCAGCTGAAACGCATCACGGACAA 569
BSNT_03732___ 510 GCAGCTGAATGAATTGACGGATAAAGATATGCAGATCCTCGCTATCAAAA 559
|.|..|.|||.||||||||.|.|||||..|.||..|.||.||.||.||||
BPUM_2228___p 570 GGAATTAAATCAATTGACGAAAAAAGACTTACAAGTGCTTGCGATTAAAA 619
BSNT_03732___ 560 GGCGTATGGATTCAGGCTATGCTTTGACCCCTCAATATATTAAAAATGAG 609
|.|..||||||.||||.|||||..|.||.|||||||..|||||||||||.
BPUM_2228___p 620 GACAAATGGATGCAGGGTATGCACTTACGCCTCAATTCATTAAAAATGAT 669
BSNT_03732___ 610 GATGTATCAGCGAAG-GAAATGGCAGTGGTAAG----TGAACATTTAGAC 654
|||||| .|||.||| |||||.|| .||.| |||.|||||.|||
BPUM_2228___p 670 GATGTA-AAGCCAAGTGAAATTGC----TTACGTCTCTGAGCATTTGGAC 714
BSNT_03732___ 655 GAACTGCCAGGTGTTGATGTCACGTCCGATTGGGAACGTGAATATCCGTA 704
||.|||||||||||.||||||||..|.||.|||..|||....||||||||
BPUM_2228___p 715 GAGCTGCCAGGTGTGGATGTCACAACAGACTGGTCACGCAGCTATCCGTA 764
BSNT_03732___ 705 TAAAAACCTTCTTCGCTCAG--TGCTCGGAAGTGTGTCCAGCTC---TAA 749
||||...||.||.|| ||| |||||||.|||||||| ||| |.|
BPUM_2228___p 765 TAAAGGACTGCTCCG--CAGTATGCTCGGCAGTGTGTC---CTCAAGTGA 809
BSNT_03732___ 750 TGAAGGATT---GCCGTC-CAACTTGCTCGACCATTATCTGTCGCTTGGC 795
|||||||.| ||.||| |.|||| ||.||||||.|.|||||.|||
BPUM_2228___p 810 TGAAGGACTTCCGCAGTCACTACTT----GAACATTATTTATCGCTCGGC 855
BSNT_03732___ 796 TACAGCCGAAATGACAGGGTCGGAAAAAGCTATCTGGAATACCAATATGA 845
||||||||||||||..|.||.||||||||||||.|.|||||.||||||||
BPUM_2228___p 856 TACAGCCGAAATGATCGTGTAGGAAAAAGCTATTTAGAATATCAATATGA 905
BSNT_03732___ 846 AAGCCTTCTGCAGGGCCAAAAAGCAAAAGTCGAAAATATCACA---GATT 892
|....|.|||||.||.||.||.|.|||| ||..|.|.|||| |||.
BPUM_2228___p 906 AGATGTCCTGCAAGGACAGAAGGAAAAA---GAGCAGAGCACAACTGATA 952
BSNT_03732___ 893 CAAAAGGCAATGTCACGGGAACAAAAACGGTATCTGAAGGCAAAG-CCGG 941
.|.|.||||||||.||..|..|.|||..|.||.|.||||| |||| .|||
BPUM_2228___p 953 AAGAGGGCAATGTAACAAGCTCTAAAGTGCTAACAGAAGG-AAAGAGCGG 1001
BSNT_03732___ 942 GAAAGATCTTGTACTAACAATTGATATTGATTTGCAAAAATCAGTGGAAA 991
||||||.|||||.||.||.|||||||||.|..|.|||||..||||.||||
BPUM_2228___p 1002 GAAAGACCTTGTGCTCACTATTGATATTCAACTACAAAAGGCAGTTGAAA 1051
BSNT_03732___ 992 AAATTATTGAGAAAAAACTT--AAAGCTGCTAAAGCAAGACCTAGTACCG 1039
|.||.||||| |||.||||| |||| |||.|||..||||....|.||.|
BPUM_2228___p 1052 AGATCATTGA-AAAGAACTTAAAAAG-TGCGAAACAAAGAGGCGGGACAG 1099
BSNT_03732___ 1040 A-ATTGTTGGATCGTGCATTCGTTGTCATGATGGACCCTAGAAACGGCGA 1088
| .||.|| ||||||||.||.|||||||||||||||||||||||.||.||
BPUM_2228___p 1100 AGCTTCTT-GATCGTGCGTTTGTTGTCATGATGGACCCTAGAAATGGAGA 1148
BSNT_03732___ 1089 AGTGCTGACAATGGCAGGGAAGCAGATT--AAACGAGAAAATGGAGCCTA 1136
|||.||..|..|.||.|||||.|||||| |||| .||||.|||...||
BPUM_2228___p 1149 AGTTCTCTCCGTTGCTGGGAAACAGATTTCAAAC--AAAAACGGAAAATA 1196
BSNT_03732___ 1137 TAAGTTTGATGATTATGCATTAGGAGCCATGACTTCATCCTACGCTATGG 1186
.||.||||||||.||.|||||||||.|.|||||.||||||||.||.||||
BPUM_2228___p 1197 CAAATTTGATGACTACGCATTAGGAACAATGACATCATCCTATGCGATGG 1246
BSNT_03732___ 1187 GATCAGCTGTAAAAGGTGCAACCGTTTTGACCGGTCT-TCAAACTGGAGC 1235
|.|||||.||||||||.||.||.||..||||.|| || |.||||.||.|.
BPUM_2228___p 1247 GCTCAGCCGTAAAAGGAGCCACTGTACTGACTGG-CTATAAAACAGGTGT 1295
BSNT_03732___ 1236 GATTAAT-TTG--AATA--CTGTATTTAAGGATGAACCATTGTATATCGG 1280
||||.|| ||| |.|| |.|| |.||||||||..||||.||||.
BPUM_2228___p 1296 GATTCATATTGGAAGTACCCAGT-----ACGATGAACCTCTGTACATCGC 1340
BSNT_03732___ 1281 CCAGGATAA------AAGAGGGAAAAAATCTTGGCAAAACTTAGGGCCGG 1324
.||| |.| ||| |||||.|..||||| ||
BPUM_2228___p 1341 GCAG--TCACCACCTAAG-------AAATCCTATCAAAA--TA------- 1372
BSNT_03732___ 1325 TTGGTATTCA----------AACTGCATTAGAGAAGTCATCAAACGTTTT 1364
|||.|.||| |||.|||.|.|||...|||||.|||||.|.
BPUM_2228___p 1373 -TGGGACTCATTAATGATTTAACGGCACTCGAGCGTTCATCTAACGTGTA 1421
BSNT_03732___ 1365 TATGTTTAAAACAGCTATTGCAGTTGGTAAAGGTGAATAT----AAACCT 1410
|||||||||||||||.|||||.|||||.|||||.||.||| |.|
BPUM_2228___p 1422 TATGTTTAAAACAGCGATTGCTGTTGGAAAAGGGGAGTATCGTAAGA--- 1468
BSNT_03732___ 1411 CACCAAGCATTGCCTTTGGATACTTCTGCATTTGATACCTTCAGAAATTA 1460
|||||.|..|.||..|.|||.|....||.||||||||.|||.|..||.|
BPUM_2228___p 1469 -ACCAACCGCTCCCAATCGATCCGAAAGCTTTTGATACATTCCGTTATAA 1517
BSNT_03732___ 1461 TTTCAGTCAATTTGGATTAGGAGTAAAAACAGGAATTGATCTACCAAATG 1510
|||||||.|||||||..|.||.||.||||||||||||||.||.|||||.|
BPUM_2228___p 1518 TTTCAGTAAATTTGGTCTTGGGGTCAAAACAGGAATTGACCTGCCAAACG 1567
BSNT_03732___ 1511 AAATGACGGGATATAAAGG------TACAAGCAGATTATCTGGTTTCTTG 1554
||..|||.||.||...||| |||| || ||||||..||.||
BPUM_2228___p 1568 AAGCGACAGGCTACCGAGGAACGTCTACA--CA----ATCTGGACTCCTG 1611
BSNT_03732___ 1555 CTTGATTTCGCCATTGGACAGTATGATACTTATACACCGCTGGAATTGGC 1604
|||||.|..||.|||||||||||||||||.|.||||||||||.||.||||
BPUM_2228___p 1612 CTTGACTATGCAATTGGACAGTATGATACGTTTACACCGCTGCAAATGGC 1661
BSNT_03732___ 1605 TCAATATGTCTCCACCATAGCAAATGGTGGCTACCGCATGAAG-CCTCAG 1653
.|||||.||.||.||..|.||.|||||.||.||.|| .|.|.| ||.|||
BPUM_2228___p 1662 GCAATACGTTTCAACGGTTGCCAATGGCGGATATCG-TTTACGTCCGCAG 1710
BSNT_03732___ 1654 CTTGTAAAGGAAGTCAGAGATTCAAATGCGAAAAAAGGGATCGGCGCAGT 1703
|||||.||.|||||.|||||..||.||.||.|....||.||.||.||.||
BPUM_2228___p 1711 CTTGTGAAAGAAGTGAGAGAGCCAGATCCGCAGCGCGGCATTGGTGCTGT 1760
BSNT_03732___ 1704 CGTTGATTCTGTTCAGCCTGAAGTATTGAATAAAGTCGATATGAAGAGTA 1753
....||.||.||..|.||.||.||||||||||||.|.||.||||..||
BPUM_2228___p 1761 AACAGAATCCGTCAAACCAGACGTATTGAATAAACTAGACATGACAAG-- 1808
BSNT_03732___ 1754 GCTATATTGAAGAGGTCCAAGCCGGT-TTTAG-ACGGGT----------- 1790
|||..||.| ||||| || ||.|| |.||||
BPUM_2228___p 1809 -------TGATCAGAT-CAAGC--GTGTTCAGCAAGGGTTCAAGCTTGTC 1848
BSNT_03732___ 1791 -TGC----CACTAAAGGGACAGCTGCAGGTCAACTGG--CTTCAGCATC- 1832
||| |.|.|.||||||||| |.|||.| |||..|||.|
BPUM_2228___p 1849 ATGCAGAACCCAAGAGGGACAGC-------CTACTCGAACTTTGGCAACA 1891
BSNT_03732___ 1833 ----GTATAAACCAGCTGCAAAAACAGGAACAGCCCAATCATTTTACGAC 1878
||||||.|||||||..||.||||||||.||.||||||||.||.|||
BPUM_2228___p 1892 AAAAGTATAACCCAGCTGGCAAGACAGGAACCGCTCAATCATTCTATGAC 1941
BSNT_03732___ 1879 GGACCGGATAAATCAAAAACA-----GGAACAGACACTTATAATACGACG 1923
||.|| |||.||||.|| ||.|||...||.||.||.|||||.
BPUM_2228___p 1942 GGCCC-----AATTAAAAGCAAACGCGGCACACCAACATACAACACGACA 1986
BSNT_03732___ 1924 CTTGTGGCTTATGCACCAGCTGACAATCCTGAGATTGCTATTTCTGTCGT 1973
||||||||.|||||.||.|||||.||.||.||..|.||.|||||.|||||
BPUM_2228___p 1987 CTTGTGGCGTATGCGCCTGCTGATAACCCAGAAGTGGCCATTTCCGTCGT 2036
BSNT_03732___ 1974 AGTTCCTTGGACTTA-CATTGATTACAATCAAAGATACTCAATTACAAAC 2022
.||.||.|||...|| || .||.||||||||..|.||..||||||||||.
BPUM_2228___p 2037 TGTACCATGGGTGTATCA-GGACTACAATCAGCGCTATCCAATTACAAAT 2085
BSNT_03732___ 2023 GAAATCGG----CAGGGAAGTAATGGATAAATATTTTGAGCTGAAATCGA 2068
||.||||| | |||||.|.||.|||||.||||||||.|||||.|
BPUM_2228___p 2086 GATATCGGTGAAC----AAGTATTAGACAAATACTTTGAGCTAAAATCAA 2131
BSNT_03732___ 2069 AGCAGGACAAAG--AAGATACTC-AGCAAAAGAATAAAGACAAAATTGAA 2115
|.|||| |||| |.|||||.| ||| .|||||.|||.|.||||||
BPUM_2228___p 2132 AACAGG--AAAGCAATGATACACAAGC-GAAGAACAAAAATAAAATT--- 2175
BSNT_03732___ 2116 GAAAATGCAGAAAACACAACGTCTTCTGATAACTAA 2151
|||||||.||.|.|.|||| ||.||||.
BPUM_2228___p 2176 GAAAATGAAGCAGAAACAA---------ATGACTAG 2202
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