Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03710 and BPUM_2215

See DNA alignment / Visit BSNT_03710 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:14
# Commandline: needle
#    -asequence pep-align/BSNT_03710___glcK.1.24716.seq
#    -bsequence pep-align/BPUM_2215___glcK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03710___glcK-BPUM_2215___glcK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03710___glcK-BPUM_2215___glcK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03710___glcK
# 2: BPUM_2215___glcK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 321
# Identity:     216/321 (67.3%)
# Similarity:   259/321 (80.7%)
# Gaps:           4/321 ( 1.2%)
# Score: 1163.0
# 
#
#=======================================

BSNT_03710___      1 MDEIWFAGIDLGGTTIKLAFINQYGEIQHKWEVPTDKTGDTITVTIAKTI     50
                     |...||.|:|||||||||||||.|||||||||:||||:|.||||.|||:|
BPUM_2215___g      1 MIGDWFVGVDLGGTTIKLAFINLYGEIQHKWEIPTDKSGQTITVDIAKSI     50

BSNT_03710___     51 DSKLDELQKPKHIIKYIGMGAPGPVDMAAGVVYETVNLGWKNYALKNHLE    100
                     |.||.|:..||..:..||||||||||..:|:||:|.||||.||.||:|||
BPUM_2215___g     51 DHKLVEISMPKSALIGIGMGAPGPVDKVSGIVYKTTNLGWTNYPLKDHLE    100

BSNT_03710___    101 TETGIPAVIENDANIAALGEMWKGAGDGAKDVILVTLGTGVGGGIIANGE    150
                     .|||:|:|||||||||||||||||||||||::::||||||||||||.|||
BPUM_2215___g    101 AETGLPSVIENDANIAALGEMWKGAGDGAKNILMVTLGTGVGGGIIVNGE    150

BSNT_03710___    151 IVHGINGAGGEIGHICSIPEGGAPCNCGKTGCIETIASATGIVRIAKEKI    200
                     :|.|..||||||||||::|..|||||||:|||||||||||||||:||:::
BPUM_2215___g    151 VVQGETGAGGEIGHICAVPFQGAPCNCGRTGCIETIASATGIVRLAKDQL    200

BSNT_03710___    201 ANVKKMTRLKATEQLSARDVFEAAGENDEIALEVVDYVAKHLGLVLGNLA    250
                     ...:..:.|.....|:|:|||:||...|::|:.||:.|..||||||.|||
BPUM_2215___g    201 VTEQHTSSLGTVTSLTAKDVFQAAESGDDLAMRVVEEVTTHLGLVLANLA    250

BSNT_03710___    251 SSLNPSKIVLGGGVSRAGELLRSKVEKTFRKCAFPRAAQAADISIAALGN    300
                     |:|||:|||:|||||:||||||||||...:..|||..|...::.||:|||
BPUM_2215___g    251 SALNPTKIVIGGGVSKAGELLRSKVENVVKYHAFPPCADDVEVVIASLGN    300

BSNT_03710___    301 DAGVIGGAWIAKNEWLKHQNC    321
                     |||||||||:|||:||.    
BPUM_2215___g    301 DAGVIGGAWMAKNKWLS----    317


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.