Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03462 and BPUM_2060
See
DNA alignment /
Visit
BSNT_03462 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence pep-align/BSNT_03462___ribA.1.24716.seq
# -bsequence pep-align/BPUM_2060___ribA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03462___ribA-BPUM_2060___ribA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03462___ribA-BPUM_2060___ribA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03462___ribA
# 2: BPUM_2060___ribA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 399
# Identity: 143/399 (35.8%)
# Similarity: 169/399 (42.4%)
# Gaps: 192/399 (48.1%)
# Score: 727.0
#
#
#=======================================
BSNT_03462___ 1 MFHPIEEALDALKKGEVIIVVDDEDRENEGDFVALAEHATPEVINFMATH 50
|:..:|||:.|||:||:|||||||||||||||||||||||||||||||.|
BPUM_2060___r 1 MYQSVEEAVKALKEGEIIIVVDDEDRENEGDFVALAEHATPEVINFMALH 50
BSNT_03462___ 51 GRGLICTPLSEEIADRLDLHPMVEHNTDSHHTAFTVSIDHRETKTGISAQ 100
||||||||:...||..|:||||||.|||:|||||||||||..|.|||||.
BPUM_2060___r 51 GRGLICTPVHASIAKHLNLHPMVEQNTDAHHTAFTVSIDHVTTTTGISAF 100
BSNT_03462___ 101 ERSFTVQALLDSTSVPSDFQRPGHIFPLIAKKGGVLKRAGHTEAAVDLAE 150
|||.|:.|:|:..:.|.:|.||||:||||||:||||:|.||||||||||:
BPUM_2060___r 101 ERSTTMLAMLNKDATPEEFARPGHVFPLIAKEGGVLERPGHTEAAVDLAK 150
BSNT_03462___ 151 ACGSPGAGVICEIMNEDGTMARVPELIEIAKKHQLKMITIKDLIQYRYNL 200
..||..|||||||||.||:|||||||.:|.|:|.|||:||:.|..|.::.
BPUM_2060___r 151 LAGSQPAGVICEIMNVDGSMARVPELKDIQKQHGLKMLTIEALQTYLHHK 200
BSNT_03462___ 201 -TTLVEREVDITLPTDFGTFKVYGYTNEVDGKEHVAFVMGEVPFGEEPVL 249
|..:|.:
BPUM_2060___r 201 DTATIETK------------------------------------------ 208
BSNT_03462___ 250 VRVHSECLTGDVFGSHRCDCGPQLHAALNQIAAEGRGVLLYLRQEGRGIG 299
BPUM_2060___r 208 -------------------------------------------------- 208
BSNT_03462___ 300 LINKLKAYKLQEQGYDTVEANEALGFLPDLRNYGIGAQILRDLGVRNMKL 349
BPUM_2060___r 208 -------------------------------------------------- 208
BSNT_03462___ 350 LTNNPRKIAGLEGYGLSISERVPLQMEAKEHNKKYLQTKMNKLGHLLHF 398
BPUM_2060___r 208 ------------------------------------------------- 208
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.