Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03462 and BPUM_2060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03462___ribA.1.24716.seq
# -bsequence dna-align/BPUM_2060___ribA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03462___ribA-BPUM_2060___ribA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03462___ribA-BPUM_2060___ribA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03462___ribA
# 2: BPUM_2060___ribA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1240
# Identity: 462/1240 (37.3%)
# Similarity: 462/1240 (37.3%)
# Gaps: 656/1240 (52.9%)
# Score: 1440.5
#
#
#=======================================
BSNT_03462___ 1 GTGTTTC-ATCCGATAGAAGAAGCACTGGACGCTTTAAAAAAAGGCGAAG 49
.|||.|| |||.| |||||||||||.|..|.|||||.|||.||||.|||.
BPUM_2060___r 1 ATGTATCAATCAG-TAGAAGAAGCAGTAAAAGCTTTGAAAGAAGGAGAAA 49
BSNT_03462___ 50 TCATCATCGTTGTAGATGATGAAGACAGAGAAAATGAAGGAGACTTTGTG 99
||||.|||||.|||||||||||||||||||||||.|||||.||.||||||
BPUM_2060___r 50 TCATTATCGTAGTAGATGATGAAGACAGAGAAAACGAAGGGGATTTTGTG 99
BSNT_03462___ 100 GCTCTTGCCGAGCATGCAACGCCGGAAGTCATTAACTTTATGGCGACACA 149
||.|||||.||||||||.|||||.|||||.||||||||||||||...|||
BPUM_2060___r 100 GCACTTGCTGAGCATGCCACGCCTGAAGTGATTAACTTTATGGCTTTACA 149
BSNT_03462___ 150 TGGGAGAGGACTGATCTGCACGCCGCTCAGTGAGGAAATCG-----CAGA 194
|||.|||||.||.||.||.||||||.||..||.| ||| ||.|
BPUM_2060___r 150 TGGAAGAGGCCTCATTTGTACGCCGGTCCATGCG----TCGATTGCCAAA 195
BSNT_03462___ 195 CAGGCTTGATCTTCACCCTATGGTGGAGCATAATACAGATTCTCACCACA 244
|| .||..|.||.||.||.|||||.||.||.|||||||||.|.|||||.|
BPUM_2060___r 196 CA-CCTAAACCTGCATCCAATGGTAGAACAAAATACAGATGCACACCATA 244
BSNT_03462___ 245 CTGCATTTACCGTAAGCATAGACCATCGTGA-AACGAAGACAGGTATCAG 293
|.||.|||||.||.|||||.||.||| |||| |||||.|||.|||||.||
BPUM_2060___r 245 CAGCTTTTACAGTGAGCATCGATCAT-GTGACAACGACGACTGGTATTAG 293
BSNT_03462___ 294 CGCTCAAGAAAGATCTTTTACCGTTCAAGCATTGCTGGACAGCACATCCG 343
.||| |||.|.||.||.| .||| |||.|.
BPUM_2060___r 294 TGCT-----------TTTGAGCGCTCTA--------CGAC----CATGCT 320
BSNT_03462___ 344 TGCCATCT-----------------------GATTTTCAGCGTCCGGGGC 370
||||||.| ||.|||...||.||.||.|
BPUM_2060___r 321 TGCCATGTTAAATAAAGACGCGACACCAGAAGAATTTGCCCGCCCAGGTC 370
BSNT_03462___ 371 ACATTTTTCCACTGATTGCGAAAAAAGGAGGTGTCCTGAAAAGAGCGGGC 420
|..|.|||||.||.|||||.|||.||||.||.||.||..|||||.|.||.
BPUM_2060___r 371 ATGTATTTCCGCTCATTGCAAAAGAAGGCGGCGTACTAGAAAGACCAGGT 420
BSNT_03462___ 421 CATACAGAAGCTGCTGTTGATCTTGCTGAAGCTTGC-GGATCTCCAGGAG 469
||||||||.||.||.||.|||||||| |||.||.|| ||.||.| ||
BPUM_2060___r 421 CATACAGAGGCGGCGGTAGATCTTGC-GAAACTGGCAGGTTCAC----AG 465
BSNT_03462___ 470 CCGGC----GTCATTTGTGAAATTATGAATGAAGACGGAACGATGGCGAG 515
||||| |||||.||||||||||||||||.|||.||..|.||||||.|
BPUM_2060___r 466 CCGGCGGGTGTCATATGTGAAATTATGAATGTAGATGGCTCAATGGCGCG 515
BSNT_03462___ 516 AGTGCCTGAGCTCATTGAAATTGCGAAAAAGCATCAATTAAAAATGATCA 565
.||.||.| |||| ||||| || ||..||||..|.||
BPUM_2060___r 516 TGTTCCAG----------AATT----AAAAG-AT--ATCCAAAAACAGCA 548
BSNT_03462___ 566 C---CATTAAGGATTTGATTCAATACCGTTACAATCTGACAACACTTGTC 612
| | |||.||| .|||||||.|
BPUM_2060___r 549 CGGGC--TAAAGAT--------------------GCTGACAATA------ 570
BSNT_03462___ 613 GAGCGTGAAGTTGACATTACGCTG-CCTACTGATTTTGGGACAT--TTAA 659
|||| |||| ||.| |||| ||| |||| |.||
BPUM_2060___r 571 ------GAAG----CATT--GCAGACCTA-----TTT---ACATCATAAA 600
BSNT_03462___ 660 GGTTTATGGATACACA--AATGAGGTAGATGGAAAAGAGCATGTCGCATT 707
| ||||| ||.|| |.||...||||.|.
BPUM_2060___r 601 G----------ACACAGCAACGA--TCGAAACAAAATAA----------- 627
BSNT_03462___ 708 TGTGATGGGAGAGGTGCCGTTCGGAGAAGAACCGGTATTGGTCCGGGTGC 757
BPUM_2060___r 627 -------------------------------------------------- 627
BSNT_03462___ 758 ATTCAGAATGTCTCACAGGTGACGTGTTTGGGTCTCATCGCTGTGACTGC 807
BPUM_2060___r 627 -------------------------------------------------- 627
BSNT_03462___ 808 GGACCGCAGCTGCACGCCGCGCTGAACCAAATTGCCGCAGAAGGCCGTGG 857
BPUM_2060___r 627 -------------------------------------------------- 627
BSNT_03462___ 858 AGTGCTTCTGTACTTGCGCCAAGAAGGACGAGGCATCGGTTTAATCAATA 907
BPUM_2060___r 627 -------------------------------------------------- 627
BSNT_03462___ 908 AATTAAAAGCTTATAAGCTTCAGGAACAAGGTTATGACACCGTAGAAGCC 957
BPUM_2060___r 627 -------------------------------------------------- 627
BSNT_03462___ 958 AATGAGGCGCTTGGATTCTTGCCGGATCTTCGCAACTATGGCATCGGAGC 1007
BPUM_2060___r 627 -------------------------------------------------- 627
BSNT_03462___ 1008 ACAAATTTTACGCGACCTCGGTGTCCGGAATATGAAGCTTTTGACGAATA 1057
BPUM_2060___r 627 -------------------------------------------------- 627
BSNT_03462___ 1058 ATCCGCGAAAAATCGCAGGCCTTGAAGGCTACGGACTCAGTATTTCAGAA 1107
BPUM_2060___r 627 -------------------------------------------------- 627
BSNT_03462___ 1108 AGAGTGCCGCTTCAAATGGAGGCGAAAGAACACAATAAAAAATATTTGCA 1157
BPUM_2060___r 627 -------------------------------------------------- 627
BSNT_03462___ 1158 AACCAAAATGAACAAGCTAGGTCATTTACTTCATTTCTAA 1197
BPUM_2060___r 627 ---------------------------------------- 627
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