Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03436 and BPUM_2041

See DNA alignment / Visit BSNT_03436 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence pep-align/BSNT_03436.1.24716.seq
#    -bsequence pep-align/BPUM_2041___rsiX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03436-BPUM_2041___rsiX.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03436-BPUM_2041___rsiX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03436
# 2: BPUM_2041___rsiX
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 350
# Identity:     115/350 (32.9%)
# Similarity:   201/350 (57.4%)
# Gaps:          21/350 ( 6.0%)
# Score: 571.5
# 
#
#=======================================

BSNT_03436         1 ---------------MAKRKNKPAVRWIGPACAAAIAVYIAFIISPHFFD     35
                                    ||..:.|.:.:|||||.|..:.:::||:||||.|.
BPUM_2041___r      1 MEDNRSSKQIYQQMLMASGQKKKSAKWIGPAVATVVVLFMAFLISPHLFQ     50

BSNT_03436        36 -QAQPQQKEASQENAVTKTETEDSPKAASSLDHTSFVVPEKEQDNYITVA     84
                      .||...::...:::..|::...:.:|....|..|.||..|:|..|:|:|
BPUM_2041___r     51 PAAQDHHQQMKMDSSADKSQVNATLEAVKQTDGPSHVVSLKQQQKYMTMA    100

BSNT_03436        85 VADADTSAIIPVSIQKTNADQTIQDMLFESSELGILDHAITIPTFIDEVE    134
                     ..|..||.::|:||||.:....:|:|:....::.:.:....:.:::|.||
BPUM_2041___r    101 YIDESTSQVVPISIQKEDEYDHLQNMVNTYEQVRLPEMTKPLQSYMDMVE    150

BSNT_03436       135 IKEKPKQKELSIRVHQPATAFSVKDDTLLKKLLKESLKWSPYEKVKFLSD    184
                     :.|  |...|..::....:..::|:....|.::||:||||.|::|: :..
BPUM_2041___r    151 LHE--KGDTLIFQLKSDLSLDTLKEANRFKDMVKETLKWSKYKQVQ-VKT    197

BSNT_03436       185 QNETGVRIGSYGTFTEISIPKQSKRAYYLYKNKQGNFLIPSEKTFDTVKE    234
                     ...:.:::|:.|:...|||.||:|.|||:.:||.|.||:||:..:.:.::
BPUM_2041___r    198 AKGSHLQLGANGSVGTISIEKQTKHAYYVLENKSGTFLVPSKTHYSSYED    247

BSNT_03436       235 AINEMESSSQEDTTPLIQAGTVQSVTKKQKHLYIRFSKDSEVEDSIAGIL    284
                     |:..|:.:|.....|||:...::.||.|.||:.|.|...:::.||...||
BPUM_2041___r    248 AVEAMKRTSDAGLDPLIKDEPIKEVTSKGKHVTITFGASAKLSDSNDHIL    297

BSNT_03436       285 MIEGLLLTAKEFGFTEVTFTETRTNKIGKYDVSDAIPVPAAPNPIFLN--    332
                     :||||||:||:|||||||..:..|:::|.|::.:.|.|||.|||:.:.  
BPUM_2041___r    298 LIEGLLLSAKDFGFTEVTIQQAGTDQVGPYELEEPIEVPALPNPVVIKDR    347


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