Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03436 and BPUM_2041

See Amino acid alignment / Visit BSNT_03436 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence dna-align/BSNT_03436.1.24716.seq
#    -bsequence dna-align/BPUM_2041___rsiX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03436-BPUM_2041___rsiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03436-BPUM_2041___rsiX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03436
# 2: BPUM_2041___rsiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1223
# Identity:     606/1223 (49.6%)
# Similarity:   606/1223 (49.6%)
# Gaps:         403/1223 (33.0%)
# Score: 1282.5
# 
#
#=======================================

BSNT_03436         1 ---------------------------------------------ATGGC      5
                                                                  |||||
BPUM_2041___r      1 GTGGAGGACAACCGTTCATCTAAGCAAATATATCAGCAGATGCTGATGGC     50

BSNT_03436         6 AAAGCGT--------AAAAATAAGCCCGCTGTCAGGTGGATTGGCCCCGC     47
                     ||   ||        |||.|.|||     ||.||..|||||.||.||.||
BPUM_2041___r     51 AA---GTGGGCAGAAAAAGAAAAG-----TGCCAAATGGATCGGTCCAGC     92

BSNT_03436        48 GTGTGCCGCTGCAATTGCGGTT---TATATCGCCTTCATTATTTCTCCTC     94
                     |   |.|||..|..|||.||||   |.|||.||.||..|.||||||||||
BPUM_2041___r     93 G---GTCGCAACCGTTGTGGTTTTATTTATGGCGTTTTTAATTTCTCCTC    139

BSNT_03436        95 ATTTCTTTGATCAGGCACAGCCTCAACAAAAAGAAGCGTCCCAAGAGAAC    144
                     ||||.|||         |||||            |||..|.|||||..||
BPUM_2041___r    140 ATTTATTT---------CAGCC------------AGCTGCTCAAGATCAC    168

BSNT_03436       145 -----GCAGTAACGAAAACTGA----------GACAGAAGACA-------    172
                          |||  ||.|||||..||          ||||.|||.||       
BPUM_2041___r    169 CATCAGCA--AATGAAAATGGATTCAAGTGCTGACAAAAGTCAGGTGAAC    216

BSNT_03436       173 GCC--------------CAAA-AG-CTGCATCGTCCTTGGATCATACATC    206
                     |||              |||| || ||| ||.|.||      |..|||  
BPUM_2041___r    217 GCCACATTAGAAGCGGTCAAACAGACTG-ATGGGCC------CTCACA--    257

BSNT_03436       207 GTTTGTTGTACCTGAAAAGGAACAAGACAATTACATCACTGTAGCAGTTG    256
                        ||||||..||...|||.|.||..|.||.||.||.||..|.||     
BPUM_2041___r    258 ---TGTTGTTTCTCTTAAGCAGCAGCAAAAGTATATGACCATGGC-----    299

BSNT_03436       257 CTGATGCCGATACAT-----------CCGCAATCA-----TACCCGTCAG    290
                              ||||||           ||.|  |||     ||||..|.||
BPUM_2041___r    300 ---------ATACATAGATGAATCGACCTC--TCAAGTGGTACCAATTAG    338

BSNT_03436       291 CATCCAAAAAACAAATGCAGACCAAACGATC-----CAGGATATGCTG--    333
                     |||.||||||....||| ||    .|.||||     |||.|||||.||  
BPUM_2041___r    339 CATTCAAAAAGAGGATG-AG----TATGATCATTTGCAGAATATGGTGAA    383

BSNT_03436       334 ----TTTGAA-AGTAGTGAATTGGGCATCCTTGATCATGCC----ATTAC    374
                         |.|||| ||  |||    .|||           ||||    ||.||
BPUM_2041___r    384 CACATATGAACAG--GTG----CGGC-----------TGCCTGAAATGAC    416

BSNT_03436       375 AATTCCAACCT------TCATAGATGAA----GTAGA--------AATAA    406
                     ||    |||||      ||.||.|||.|    ||.||        || ||
BPUM_2041___r    417 AA----AACCTCTTCAGTCTTATATGGATATGGTGGAGCTTCATGAA-AA    461

BSNT_03436       407 AGGAAAAAC----------CAAAGCAGAAG-GAATTAAGTATACGAGTCC    445
                     ||||.|.||          |||...|.||| ||.||          ||||
BPUM_2041___r    462 AGGAGATACACTTATTTTTCAATTAAAAAGTGATTT----------GTCC    501

BSNT_03436       446 ATCAGCCAGCTACGGCATTTTCTGTAAAAGATGATACACTGTTAAAAAAA    495
                          |..|.||||         .|||||||.|..|..|.|||.|||.|.
BPUM_2041___r    502 -----CTTGATACG---------TTAAAAGAAGCCAATCGGTTTAAAGAT    537

BSNT_03436       496 TTGCTTAAAGAATCCTTAAAATGGAGTCCTTATGAAA--------AAGTC    537
                     .||.|.||||||.|..||||||||||  |..||..||        |||||
BPUM_2041___r    538 ATGGTAAAAGAAACGCTAAAATGGAG--CAAATATAAGCAGGTGCAAGTC    585

BSNT_03436       538 AA-ATTTTTATCGGATC------AAAATGAGACTGGGGTTCGGATTGGCT    580
                     || |....||..|||||      ..|||.|    ||||            
BPUM_2041___r    586 AAGACAGCTAAAGGATCTCACCTTCAATTA----GGGG------------    619

BSNT_03436       581 CATATGGCA-CTTTTACGGA--AATTTCGATTCCCAAACAGTCAAAAAGA    627
                     ||.||||.| |.||   |||  |||.||.|||...|||||..||||....
BPUM_2041___r    620 CAAATGGAAGCGTT---GGAACAATATCAATTGAAAAACAAACAAAGCAT    666

BSNT_03436       628 GCTTACTACTTGTAT--AAAAATAAACAAGGGAACTTTCTCATTCCGTCA    675
                     |||||.||  |||.|  .|.|||||....||||.||||.|..|.||.|||
BPUM_2041___r    667 GCTTATTA--TGTTTTAGAGAATAAGAGCGGGACCTTTTTGGTGCCTTCA    714

BSNT_03436       676 GAAAAAACATT-------------TGATACGGTAAAAGAAGCGATTAATG    712
                      ||||..||||             .|||.||||   |||||||    |||
BPUM_2041___r    715 -AAAACGCATTATTCATCGTATGAAGATGCGGT---AGAAGCG----ATG    756

BSNT_03436       713 AA--ATGGAATCGA-GCAG--------CC--------AAGAAGATACAAC    743
                     ||  .|..||.||| ||||        ||        ||||.||      
BPUM_2041___r    757 AAGCGTACAAGCGATGCAGGACTTGATCCATTAATTAAAGATGA------    800

BSNT_03436       744 ACCGCTTATTCAAGCGGGTACTGTCCAATCTGTAACGAAGAAACA---GA    790
                     ||||   |||.|||..|..|| |||       |||.|.| |||||   ||
BPUM_2041___r    801 ACCG---ATTAAAGAAGTGAC-GTC-------TAAAGGA-AAACATGTGA    838

BSNT_03436       791 AGCACTTATATATCCGTTTCTCAAAGGA--CTCA--GAAGTTGA--GGAT    834
                       |..|||      |||||      |||  .|||  |||.|| |  |||.
BPUM_2041___r    839 --CCATTA------CGTTT------GGAGCATCAGCGAAATT-ATCGGAC    873

BSNT_03436       835 TCTATTGCCGGTATTTTAATGATTGAGGGACTTCTTTTAACCGCAAAAGA    884
                     ||.|.||....|||||||.|.|||||.||.||.||..|..|.||.|||||
BPUM_2041___r    874 TCAAATGATCATATTTTACTCATTGAAGGTCTGCTGCTCTCAGCGAAAGA    923

BSNT_03436       885 GTTTGGCTTCACAGAAGTGACCTTT--ACCGAAACCAGAACAAACAAAAT    932
                     .|||||.||.|||||.||.|||.||  ||  |..|..|||||.|..||.|
BPUM_2041___r    924 TTTTGGTTTTACAGAGGTCACCATTCAAC--AGGCGGGAACAGATCAAGT    971

BSNT_03436       933 CGGCAAATATGACGTATCAGATGCAATTCCGGTACCGGCTGCTCCAAATC    982
                     .||...||||||..||..|||..|.||...|||.||||||...||.||||
BPUM_2041___r    972 TGGTCCATATGAATTAGAAGAACCGATAGAGGTGCCGGCTTTGCCGAATC   1021

BSNT_03436       983 CGATTTTCTTAAA------CTAA    999
                     |..||.||.||||      .|||
BPUM_2041___r   1022 CAGTTGTCATAAAAGACCGTTAA   1044


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