Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03436 and BPUM_2041
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_03436.1.24716.seq
# -bsequence dna-align/BPUM_2041___rsiX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03436-BPUM_2041___rsiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03436-BPUM_2041___rsiX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03436
# 2: BPUM_2041___rsiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1223
# Identity: 606/1223 (49.6%)
# Similarity: 606/1223 (49.6%)
# Gaps: 403/1223 (33.0%)
# Score: 1282.5
#
#
#=======================================
BSNT_03436 1 ---------------------------------------------ATGGC 5
|||||
BPUM_2041___r 1 GTGGAGGACAACCGTTCATCTAAGCAAATATATCAGCAGATGCTGATGGC 50
BSNT_03436 6 AAAGCGT--------AAAAATAAGCCCGCTGTCAGGTGGATTGGCCCCGC 47
|| || |||.|.||| ||.||..|||||.||.||.||
BPUM_2041___r 51 AA---GTGGGCAGAAAAAGAAAAG-----TGCCAAATGGATCGGTCCAGC 92
BSNT_03436 48 GTGTGCCGCTGCAATTGCGGTT---TATATCGCCTTCATTATTTCTCCTC 94
| |.|||..|..|||.|||| |.|||.||.||..|.||||||||||
BPUM_2041___r 93 G---GTCGCAACCGTTGTGGTTTTATTTATGGCGTTTTTAATTTCTCCTC 139
BSNT_03436 95 ATTTCTTTGATCAGGCACAGCCTCAACAAAAAGAAGCGTCCCAAGAGAAC 144
||||.||| ||||| |||..|.|||||..||
BPUM_2041___r 140 ATTTATTT---------CAGCC------------AGCTGCTCAAGATCAC 168
BSNT_03436 145 -----GCAGTAACGAAAACTGA----------GACAGAAGACA------- 172
||| ||.|||||..|| ||||.|||.||
BPUM_2041___r 169 CATCAGCA--AATGAAAATGGATTCAAGTGCTGACAAAAGTCAGGTGAAC 216
BSNT_03436 173 GCC--------------CAAA-AG-CTGCATCGTCCTTGGATCATACATC 206
||| |||| || ||| ||.|.|| |..|||
BPUM_2041___r 217 GCCACATTAGAAGCGGTCAAACAGACTG-ATGGGCC------CTCACA-- 257
BSNT_03436 207 GTTTGTTGTACCTGAAAAGGAACAAGACAATTACATCACTGTAGCAGTTG 256
||||||..||...|||.|.||..|.||.||.||.||..|.||
BPUM_2041___r 258 ---TGTTGTTTCTCTTAAGCAGCAGCAAAAGTATATGACCATGGC----- 299
BSNT_03436 257 CTGATGCCGATACAT-----------CCGCAATCA-----TACCCGTCAG 290
|||||| ||.| ||| ||||..|.||
BPUM_2041___r 300 ---------ATACATAGATGAATCGACCTC--TCAAGTGGTACCAATTAG 338
BSNT_03436 291 CATCCAAAAAACAAATGCAGACCAAACGATC-----CAGGATATGCTG-- 333
|||.||||||....||| || .|.|||| |||.|||||.||
BPUM_2041___r 339 CATTCAAAAAGAGGATG-AG----TATGATCATTTGCAGAATATGGTGAA 383
BSNT_03436 334 ----TTTGAA-AGTAGTGAATTGGGCATCCTTGATCATGCC----ATTAC 374
|.|||| || ||| .||| |||| ||.||
BPUM_2041___r 384 CACATATGAACAG--GTG----CGGC-----------TGCCTGAAATGAC 416
BSNT_03436 375 AATTCCAACCT------TCATAGATGAA----GTAGA--------AATAA 406
|| ||||| ||.||.|||.| ||.|| || ||
BPUM_2041___r 417 AA----AACCTCTTCAGTCTTATATGGATATGGTGGAGCTTCATGAA-AA 461
BSNT_03436 407 AGGAAAAAC----------CAAAGCAGAAG-GAATTAAGTATACGAGTCC 445
||||.|.|| |||...|.||| ||.|| ||||
BPUM_2041___r 462 AGGAGATACACTTATTTTTCAATTAAAAAGTGATTT----------GTCC 501
BSNT_03436 446 ATCAGCCAGCTACGGCATTTTCTGTAAAAGATGATACACTGTTAAAAAAA 495
|..|.|||| .|||||||.|..|..|.|||.|||.|.
BPUM_2041___r 502 -----CTTGATACG---------TTAAAAGAAGCCAATCGGTTTAAAGAT 537
BSNT_03436 496 TTGCTTAAAGAATCCTTAAAATGGAGTCCTTATGAAA--------AAGTC 537
.||.|.||||||.|..|||||||||| |..||..|| |||||
BPUM_2041___r 538 ATGGTAAAAGAAACGCTAAAATGGAG--CAAATATAAGCAGGTGCAAGTC 585
BSNT_03436 538 AA-ATTTTTATCGGATC------AAAATGAGACTGGGGTTCGGATTGGCT 580
|| |....||..||||| ..|||.| ||||
BPUM_2041___r 586 AAGACAGCTAAAGGATCTCACCTTCAATTA----GGGG------------ 619
BSNT_03436 581 CATATGGCA-CTTTTACGGA--AATTTCGATTCCCAAACAGTCAAAAAGA 627
||.||||.| |.|| ||| |||.||.|||...|||||..||||....
BPUM_2041___r 620 CAAATGGAAGCGTT---GGAACAATATCAATTGAAAAACAAACAAAGCAT 666
BSNT_03436 628 GCTTACTACTTGTAT--AAAAATAAACAAGGGAACTTTCTCATTCCGTCA 675
|||||.|| |||.| .|.|||||....||||.||||.|..|.||.|||
BPUM_2041___r 667 GCTTATTA--TGTTTTAGAGAATAAGAGCGGGACCTTTTTGGTGCCTTCA 714
BSNT_03436 676 GAAAAAACATT-------------TGATACGGTAAAAGAAGCGATTAATG 712
||||..|||| .|||.|||| ||||||| |||
BPUM_2041___r 715 -AAAACGCATTATTCATCGTATGAAGATGCGGT---AGAAGCG----ATG 756
BSNT_03436 713 AA--ATGGAATCGA-GCAG--------CC--------AAGAAGATACAAC 743
|| .|..||.||| |||| || ||||.||
BPUM_2041___r 757 AAGCGTACAAGCGATGCAGGACTTGATCCATTAATTAAAGATGA------ 800
BSNT_03436 744 ACCGCTTATTCAAGCGGGTACTGTCCAATCTGTAACGAAGAAACA---GA 790
|||| |||.|||..|..|| ||| |||.|.| ||||| ||
BPUM_2041___r 801 ACCG---ATTAAAGAAGTGAC-GTC-------TAAAGGA-AAACATGTGA 838
BSNT_03436 791 AGCACTTATATATCCGTTTCTCAAAGGA--CTCA--GAAGTTGA--GGAT 834
|..||| ||||| ||| .||| |||.|| | |||.
BPUM_2041___r 839 --CCATTA------CGTTT------GGAGCATCAGCGAAATT-ATCGGAC 873
BSNT_03436 835 TCTATTGCCGGTATTTTAATGATTGAGGGACTTCTTTTAACCGCAAAAGA 884
||.|.||....|||||||.|.|||||.||.||.||..|..|.||.|||||
BPUM_2041___r 874 TCAAATGATCATATTTTACTCATTGAAGGTCTGCTGCTCTCAGCGAAAGA 923
BSNT_03436 885 GTTTGGCTTCACAGAAGTGACCTTT--ACCGAAACCAGAACAAACAAAAT 932
.|||||.||.|||||.||.|||.|| || |..|..|||||.|..||.|
BPUM_2041___r 924 TTTTGGTTTTACAGAGGTCACCATTCAAC--AGGCGGGAACAGATCAAGT 971
BSNT_03436 933 CGGCAAATATGACGTATCAGATGCAATTCCGGTACCGGCTGCTCCAAATC 982
.||...||||||..||..|||..|.||...|||.||||||...||.||||
BPUM_2041___r 972 TGGTCCATATGAATTAGAAGAACCGATAGAGGTGCCGGCTTTGCCGAATC 1021
BSNT_03436 983 CGATTTTCTTAAA------CTAA 999
|..||.||.|||| .|||
BPUM_2041___r 1022 CAGTTGTCATAAAAGACCGTTAA 1044
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