Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03430 and BPUM_2038
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence pep-align/BSNT_03430___ypaA.1.24716.seq
# -bsequence pep-align/BPUM_2038___ypaA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03430___ypaA-BPUM_2038___ypaA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03430___ypaA-BPUM_2038___ypaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03430___ypaA
# 2: BPUM_2038___ypaA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 193
# Identity: 139/193 (72.0%)
# Similarity: 164/193 (85.0%)
# Gaps: 3/193 ( 1.6%)
# Score: 728.0
#
#
#=======================================
BSNT_03430___ 1 ---MKVKKLVVVSMLSSIAFVLMLLNFPFPGLPDYLKIDFSDVPAIIAIL 47
.|||:|||.||||||:|||:||:|||||||.||||||||:|||||||
BPUM_2038___y 1 MNQSKVKRLVVTSMLSSISFVLILLDFPFPGLPAYLKIDFSDIPAIIAIL 50
BSNT_03430___ 48 IYGPLAGIAVEAIKNVPQYIIQGSMAGVPVGQVANFIAGTLFILPTAFLF 97
||||.|||||||:|||..|:|||||:|||||||||||||||||||.||:|
BPUM_2038___y 51 IYGPGAGIAVEALKNVLHYLIQGSMSGVPVGQVANFIAGTLFILPVAFMF 100
BSNT_03430___ 98 KKLNSAKGLAVSLLLGTAAMTILMSILNYVLILPAYTWFLHSPALSDSAL 147
||:.||||:|.|:::||..||::||||||.|.||||||||::|.|||.||
BPUM_2038___y 101 KKIKSAKGMAWSMIMGTLLMTVMMSILNYFLFLPAYTWFLNAPELSDHAL 150
BSNT_03430___ 148 KTAVVAGILPFNMIKGIVITVVFSLIFIKLKPWIEQQRSAHIH 190
||.:.|||||||.||||:||:|||.||:|::||.|.:|.....
BPUM_2038___y 151 KTTITAGILPFNFIKGIIITIVFSFIFVKMRPWFENKRRLQNS 193
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