Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03430 and BPUM_2038

See Amino acid alignment / Visit BSNT_03430 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence dna-align/BSNT_03430___ypaA.1.24716.seq
#    -bsequence dna-align/BPUM_2038___ypaA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03430___ypaA-BPUM_2038___ypaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03430___ypaA-BPUM_2038___ypaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03430___ypaA
# 2: BPUM_2038___ypaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 600
# Identity:     413/600 (68.8%)
# Similarity:   413/600 (68.8%)
# Gaps:          45/600 ( 7.5%)
# Score: 1286.5
# 
#
#=======================================

BSNT_03430___      1 ----GTGAAAGTAAA--AAAA---TTAGTTGTGGTCAGCATGCTGAGCAG     41
                         .|.||||||||  ||||   ||||||||...|||.|||||.|||||
BPUM_2038___y      1 TTGAATCAAAGTAAAGTAAAACGTTTAGTTGTCACCAGTATGCTTAGCAG     50

BSNT_03430___     42 CATTGCATTTGTTTTGATGCTGTTAAATTTCCCGTTTCCGGGTCTTCCGG     91
                     .|||.|||||||.||.||..|.||..||||.||.||.||.||.|||||.|
BPUM_2038___y     51 TATTTCATTTGTGTTAATTTTATTGGATTTTCCTTTCCCAGGGCTTCCAG    100

BSNT_03430___     92 ATTATTTAAAAATCGATTTTAGCGACGTTCCCGCTATTATTGCCATTCTG    141
                     ..|||||.|||||.|||||.|||||..|.||.||.||||||||.|||.|.
BPUM_2038___y    101 CGTATTTGAAAATTGATTTCAGCGATATCCCAGCGATTATTGCGATTTTA    150

BSNT_03430___    142 ATTTACGGACCTTTGGCGGGTATTGCCGTAGAAGCGATAAAAAATGTTCC    191
                     |||||.|||||....||.||.||.|||||.||.||..||||||||||||.
BPUM_2038___y    151 ATTTATGGACCAGGTGCAGGAATCGCCGTTGAGGCATTAAAAAATGTTCT    200

BSNT_03430___    192 TCAGTATATCATTCAGGGAAGCATGGCCGGAGTTCCTGTAGGGCAAGTTG    241
                     .||.|||.|||||||.||.||.|||.||||.|||||.||.||||||||.|
BPUM_2038___y    201 GCATTATCTCATTCAAGGCAGTATGTCCGGCGTTCCAGTTGGGCAAGTCG    250

BSNT_03430___    242 CGAATTTTATTGCAGGAACACTCTTTATATTGCCGACT-GCTTTCTTATT    290
                     ||||.||.||||||||.|||||.||.||.||.|| |.| ||.|||.|.||
BPUM_2038___y    251 CGAACTTCATTGCAGGCACACTATTCATCTTACC-AGTCGCCTTCATGTT    299

BSNT_03430___    291 TAAAAAACTCAACTCAGCAAAGGGCTTGGCT--GTCAGCCTGCTTTTGGG    338
                     .||||||.|.||.||||||||.||..|||||  ||||  .||.|..||||
BPUM_2038___y    300 CAAAAAAATTAAATCAGCAAAAGGAATGGCTTGGTCA--ATGATCATGGG    347

BSNT_03430___    339 AACTGCAGCGATGACCATTTTAATGAGTATTTTAAATTATGTTCTGATT-    387
                     .||...|...|||||..|..|.|||||.||||||||||| .||||.||| 
BPUM_2038___y    348 TACATTACTTATGACTGTGATGATGAGCATTTTAAATTA-CTTCTTATTC    396

BSNT_03430___    388 CTTCCGGCATACACGTGGTTTTTACATTCACCGGCATTATCCGA-CAGCG    436
                     ||.||.||.|||||.|||||||||.|..||||.|.|.||||.|| || .|
BPUM_2038___y    397 CTGCCAGCTTACACATGGTTTTTAAACGCACCAGAACTATCAGATCA-TG    445

BSNT_03430___    437 CGCTAAAAAC-AGCAGT-CGTCGCAGGTATCCTCCCGTTTAACATGATAA    484
                     ||||.||.|| |.||.| |  .||.||.||..|.||.||||||.|.||.|
BPUM_2038___y    446 CGCTCAAGACGACCATTAC--AGCGGGGATTTTACCTTTTAACTTTATTA    493

BSNT_03430___    485 AAGGTATTGTAATTACGGTTGTATT---CTCACTAATTTTTATCAA---G    528
                     ||||.||..|.|||||..|.|||||   ||   |.||||||.|.||   |
BPUM_2038___y    494 AAGGAATCATCATTACCATCGTATTTAGCT---TCATTTTTGTGAAAATG    540

BSNT_03430___    529 CTTAAGCCATGGATTGAGCA-----GCAGCGAAGTGCACATATCCATTAA    573
                     |.|   ||||||.||||..|     ||  |||..|..|.|||   .||||
BPUM_2038___y    541 CGT---CCATGGTTTGAAAATAAACGC--CGACTTCAAAATA---GTTAA    582


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