Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03383 and BPUM_2007

See DNA alignment / Visit BSNT_03383 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence pep-align/BSNT_03383___hepS.1.24716.seq
#    -bsequence pep-align/BPUM_2007___hepS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03383___hepS-BPUM_2007___hepS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03383___hepS-BPUM_2007___hepS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03383___hepS
# 2: BPUM_2007___hepS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 262
# Identity:     158/262 (60.3%)
# Similarity:   188/262 (71.8%)
# Gaps:          18/262 ( 6.9%)
# Score: 778.0
# 
#
#=======================================

BSNT_03383___      1 MQDIYGTLANLNTKLKQKLSHPYLAKHISAPKIDEDKLLLFHALFEEADI     50
                     ||||||.|:|||.||.:||||||||||:.||.|||||||||||:|:||.|
BPUM_2007___h      1 MQDIYGILSNLNIKLNKKLSHPYLAKHLRAPLIDEDKLLLFHAMFDEAQI     50

BSNT_03383___     51 KNNDRENYIVTAMLVQSALDTHDEVTTARVIKRDENKNRQLTVLAGDYFS    100
                     ....:||||:||||||.|||||||||||..||:||.||||||:|||||||
BPUM_2007___h     51 DAEKKENYILTAMLVQIALDTHDEVTTAAAIKQDEFKNRQLTILAGDYFS    100

BSNT_03383___    101 GLYYSLLSEMKDIYMIRTLATAIKEINEHKIRLYDRSFKDENDFFESVGI    150
                     ||||||||:||||||||||||||||||||||||||||.:|...|::||..
BPUM_2007___h    101 GLYYSLLSDMKDIYMIRTLATAIKEINEHKIRLYDRSIQDAAHFYKSVAT    150

BSNT_03383___    151 VESALFHRVAEHFSLPRWKKLSSDFFVFKRLMNG-----------NDAFL    189
                     ||||||.||:|||.|..|.:::|.|.|:||.|..           ||:..
BPUM_2007___h    151 VESALFQRVSEHFQLTHWNEIASRFLVYKRFMKQAEDDKHLKLFLNDSHT    200

BSNT_03383___    190 DVIGSFIQLGKTKEEILEDCFKKAKNSIESLLPLNSPIQNILINRLKTIS    239
                     |....|       :....:.::||:.||:..|..:..:|..|:|||..:.
BPUM_2007___h    201 DAYTCF-------DNFENEGYEKARRSIKEHLVSSPVVQKELLNRLDHMK    243

BSNT_03383___    240 QDQTYHQKVEEG    251
                     .:..||||||||
BPUM_2007___h    244 NEPAYHQKVEEG    255


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