Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03383 and BPUM_2007

See Amino acid alignment / Visit BSNT_03383 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence dna-align/BSNT_03383___hepS.1.24716.seq
#    -bsequence dna-align/BPUM_2007___hepS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03383___hepS-BPUM_2007___hepS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03383___hepS-BPUM_2007___hepS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03383___hepS
# 2: BPUM_2007___hepS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 839
# Identity:     535/839 (63.8%)
# Similarity:   535/839 (63.8%)
# Gaps:         154/839 (18.4%)
# Score: 1732.0
# 
#
#=======================================

BSNT_03383___      1 TTGCAAGACATCTACGGAACTTTAGCCAATCTGAACACGAAATTAAAACA     50
                     |||||||||||||||||||.||||.|.|||||.||.|..||||||||..|
BPUM_2007___h      1 TTGCAAGACATCTACGGAATTTTATCTAATCTAAATATAAAATTAAATAA     50

BSNT_03383___     51 AAAGCTGTCTCATCCTTATTTAGCGAAGCATATTTC-TGCGCCGAAAATT     99
                     ||||||.||||||||||||||.|||||.||| ||.| ||||||....||.
BPUM_2007___h     51 AAAGCTTTCTCATCCTTATTTGGCGAAACAT-TTACGTGCGCCACTCATC     99

BSNT_03383___    100 GATGAGGATAAGCTTCTTCTTTTTCATGCTTTATTTGAAGAAGCTGACAT    149
                     |||||.||||||||.||||||||||||||..|.|||||.||||||.|.||
BPUM_2007___h    100 GATGAAGATAAGCTCCTTCTTTTTCATGCAATGTTTGATGAAGCTCAAAT    149

BSNT_03383___    150 ----------AAAAAACAACGACAGAGAAAATTATATTGTAACAGCGATG    189
                               |||||          |||||||||||||.||||.||||||
BPUM_2007___h    150 TGATGCAGAGAAAAA----------AGAAAATTATATTTTAACGGCGATG    189

BSNT_03383___    190 CTTGTACAAAGCGCCCTTGATACCCATGATGAAGTGACGACAGCTAGAGT    239
                     |||||.||||..|||||||||||||||||.|||||.||.||.|||..||.
BPUM_2007___h    190 CTTGTGCAAATTGCCCTTGATACCCATGACGAAGTCACAACTGCTGCAGC    239

BSNT_03383___    240 CATAAAACGAGACGAAAACAAAAACCGCCAATTGACTGTTCTCGCGGGCG    289
                     .||.||||.|||||||..||||||.||.||..|||||.|..|.||.||.|
BPUM_2007___h    240 GATCAAACAAGACGAATTCAAAAATCGTCAGCTGACTATCTTGGCAGGAG    289

BSNT_03383___    290 ATTATTTCAGCGGGCTGTACTACTCTTTACTATCTGAAATGAAGGATATC    339
                     |.|||||||||||.||.||.||.|||.|.||.||.||.|||||.||.|||
BPUM_2007___h    290 ACTATTTCAGCGGTCTCTATTATTCTCTTCTCTCCGACATGAAAGACATC    339

BSNT_03383___    340 TACATGATTCGGACGCTTGCTACAGCCATTAAAGAAATCAACGAACATAA    389
                     |||||||||||.|||||.||.||.||.||.|||||||||||.||||||||
BPUM_2007___h    340 TACATGATTCGCACGCTCGCAACGGCGATCAAAGAAATCAATGAACATAA    389

BSNT_03383___    390 AATTCGTCTGTATGACCG-TTCTTTCAAG----GACGAAAACGATTTTTT    434
                     ||||.|.||.|||||.|| |.|.||||||    |.||     .|.||||.
BPUM_2007___h    390 AATTAGACTATATGATCGATCCATTCAAGATGCGGCG-----CACTTTTA    434

BSNT_03383___    435 CGAAAGTGTCGGCATC-GTTGAATCAGCTTTATTCCATCGTGTGGCGGAA    483
                     ..||||||| .|||.| |||||.||.||.||||||||..|.||..|.||.
BPUM_2007___h    435 TAAAAGTGT-AGCAACGGTTGAGTCTGCGTTATTCCAAAGGGTTTCTGAG    483

BSNT_03383___    484 CACTTCAGCCTC-----CCGCGCTGGAAAAAGCTGTCGAGTGATTTTTTT    528
                     ||.||     ||     .|||..|||||..||.|..|.|||..|||..||
BPUM_2007___h    484 CATTT-----TCAATTAACGCATTGGAATGAGATTGCAAGTCGTTTCCTT    528

BSNT_03383___    529 GTATTTAAGCGGCTTATGAA-----CGGAAATGATG-----CATTT----    564
                     ||.|.||||||..|.|||||     |.|||  ||||     |||||    
BPUM_2007___h    529 GTTTATAAGCGTTTCATGAAACAAGCAGAA--GATGACAAACATTTAAAA    576

BSNT_03383___    565 CTGGATGTGATCG--------------GCAGTTTTATACA-GCTGGGAAA    599
                     ||...|.|||.||              ||    .|||||| |.|..||.|
BPUM_2007___h    577 CTTTTTTTGAACGATAGCCATACGGACGC----CTATACATGTTTTGACA    622

BSNT_03383___    600 AACAAAAGAAGAGATATTAGAA-GATTGTTTTAAAAAAGCGA--------    640
                     |            .|.|.|||| ||..|.|.|.||||.||.|        
BPUM_2007___h    623 A------------CTTTGAGAATGAAGGCTATGAAAAGGCCAGACGATCA    660

BSNT_03383___    641 --AAAACAGCATTGAGTCACTTCTGCC------TCTAAATTCACCTATTC    682
                       .||..|||||...||..|.||| ||      ||.|||           
BPUM_2007___h    661 ATCAAGGAGCATCTCGTTTCATCT-CCGGTCGTTCAAAA-----------    698

BSNT_03383___    683 AGAACATTTTAATAAACCGTCTGAAGACAATCAGCCAAGATCA-------    725
                     |||.|    ||.||||.||.|||               |||||       
BPUM_2007___h    699 AGAGC----TATTAAATCGCCTG---------------GATCATATGAAA    729

BSNT_03383___    726 ----AACC----TATCATCAGAAAGTGGAAGAAGGGTAA    756
                         ||||    |||||||||||||||||||||||||||
BPUM_2007___h    730 AATGAACCTGCGTATCATCAGAAAGTGGAAGAAGGGTAA    768


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