Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03378 and BPUM_2003

See DNA alignment / Visit BSNT_03378 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence pep-align/BSNT_03378___cheR.1.24716.seq
#    -bsequence pep-align/BPUM_2003___cheR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03378___cheR-BPUM_2003___cheR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03378___cheR-BPUM_2003___cheR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03378___cheR
# 2: BPUM_2003___cheR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 259
# Identity:     180/259 (69.5%)
# Similarity:   214/259 (82.6%)
# Gaps:           3/259 ( 1.2%)
# Score: 944.0
# 
#
#=======================================

BSNT_03378___      1 MDTYSVFTTKWKQLTGVDLTLYKEAQMKRRLTSLYEKKGFQSFKDFAAAL     50
                     ||.|.||..|||:||||||.|||||||||||||||:|||::.|:.|||||
BPUM_2003___c      1 MDQYQVFVGKWKKLTGVDLNLYKEAQMKRRLTSLYDKKGYRDFEAFAAAL     50

BSNT_03378___     51 EKEQALLNETLDRMTINVSEFYRNYKRWEVLETAILPLI-KTSRPLKIWS     99
                     ||::|||:||:||||||||||||||:|||||:..||||: |....|||||
BPUM_2003___c     51 EKDRALLDETMDRMTINVSEFYRNYQRWEVLDQKILPLLSKNGGTLKIWS    100

BSNT_03378___    100 AACSTGEEPYTLAMLLDQQKGLPGYQILATDIDEKALEKAKKGVYQERSL    149
                     ||||||||||||:|||.....:..:||:|||||:|.|:.|:||.|.||||
BPUM_2003___c    101 AACSTGEEPYTLSMLLSSHPLVKDFQIIATDIDDKVLQSAQKGRYHERSL    150

BSNT_03378___    150 QEVPLSVKDRYFTQNANRSYEVKTEIKKNITFKKHNLLADRYEQDFDLIV    199
                     ||||..:|.:|||:..:..|.||.|::::|.|||||||||.||:..||||
BPUM_2003___c    151 QEVPDQIKQKYFTKEDSSFYTVKDEVRRHIQFKKHNLLADPYEKQLDLIV    200

BSNT_03378___    200 CRNVFIYFTESAKEELYLKMAHSLKKNGVLFVGSTEQIFNPEKFGLVPAD    249
                     ||||.|||||.||||:|:||::|||.|||||||||||||:||||||..||
BPUM_2003___c    201 CRNVLIYFTEEAKEEIYMKMSNSLKPNGVLFVGSTEQIFHPEKFGLTSAD    250

BSNT_03378___    250 TFFYQKR--    256
                     ||||||:  
BPUM_2003___c    251 TFFYQKKGM    259


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