Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03378 and BPUM_2003

See Amino acid alignment / Visit BSNT_03378 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence dna-align/BSNT_03378___cheR.1.24716.seq
#    -bsequence dna-align/BPUM_2003___cheR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03378___cheR-BPUM_2003___cheR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03378___cheR-BPUM_2003___cheR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03378___cheR
# 2: BPUM_2003___cheR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 828
# Identity:     554/828 (66.9%)
# Similarity:   554/828 (66.9%)
# Gaps:         105/828 (12.7%)
# Score: 1709.0
# 
#
#=======================================

BSNT_03378___      1 ATGGATACATA-CAGCGTATTTACAACGAAATGGAAACAATTAACCGGAG     49
                     ||||||..||| || .||||||.....||||||||||.||.|||||||||
BPUM_2003___c      1 ATGGATCAATATCA-AGTATTTGTCGGGAAATGGAAAAAACTAACCGGAG     49

BSNT_03378___     50 TCGAT-TTAACACTATATAAAGAAGCACAAATGAAGAGAAGGCTAACGTC     98
                     |.||| |||| ..||||||||||||||||||||||..||||..|||||||
BPUM_2003___c     50 TGGATCTTAA-TTTATATAAAGAAGCACAAATGAAACGAAGATTAACGTC     98

BSNT_03378___     99 ACTTTATGAGAAAAAGGGGTTCCAAAG---CTTTAAGGACTTTGCTGCGG    145
                     |||||||||.|||||.||   |.|.||   .|||.|.|.||||||.||.|
BPUM_2003___c     99 ACTTTATGATAAAAAAGG---CTATAGAGATTTTGAAGCCTTTGCGGCTG    145

BSNT_03378___    146 CATTGGAAAAGGAACAAGCTCTCTTAAATGAAACATTGGACAGAATGACG    195
                     |..|.||||||||...|||.||.|||.||||.||..||||..||||||||
BPUM_2003___c    146 CCCTTGAAAAGGATAGAGCACTATTAGATGAGACGATGGATCGAATGACG    195

BSNT_03378___    196 ATCAATGTTTCAGAATTTTATCGTAATTATAAAAGATGGGAAGTTCTTGA    245
                     ||.|||||.|||||||||||.||.||.|||.|..|.||||||||.|||||
BPUM_2003___c    196 ATTAATGTGTCAGAATTTTACCGAAACTATCAGCGCTGGGAAGTGCTTGA    245

BSNT_03378___    246 GACTGC----AATTCTGCCGTTAATC------AAGACCTCTAGGCCTTTA    285
                         .|    ||||||.||   |.||      ||.|.|..|.||.|.||.
BPUM_2003___c    246 ----TCAAAAAATTCTCCC---ACTCCTTTCGAAAAACGGTGGGACCTTG    288

BSNT_03378___    286 AAAATTTGGAGTGCCGCCTGCTCAACGGGGGAGGAGCCATACACGCTTGC    335
                     |||||.||||||||.||.||.||.||.||.|||||||||||.||.||..|
BPUM_2003___c    289 AAAATATGGAGTGCGGCATGTTCGACAGGAGAGGAGCCATATACACTCTC    338

BSNT_03378___    336 CATGCT--TTTGGA-CCAGCAA-----AAAGGTCTTCCGGGCTATCAGAT    377
                     .|||||  |.|..| |||.|.|     .||||.||||        ||.||
BPUM_2003___c    339 AATGCTGCTATCAAGCCATCCACTTGTGAAGGACTTC--------CAAAT    380

BSNT_03378___    378 TTTAGCGACGGATATTGATGAAAAAGCATTGGAAAAAGCGAAAAAAGGCG    427
                     |.|.||.||.|||||||||||.||||...||.||..|||..|||||||..
BPUM_2003___c    381 TATTGCAACTGATATTGATGATAAAGTGCTGCAATCAGCTCAAAAAGGAA    430

BSNT_03378___    428 TTTATCAGGAGCGGTCTTTACAGGAAGTGCCGCTATCTGTGAAAGATCGT    477
                     ..||.||.||.||.||..||||.||.||.||            |||||  
BPUM_2003___c    431 GATACCATGAACGATCACTACAAGAGGTACC------------AGATC--    466

BSNT_03378___    478 TATTTTACGCAAAA------CGCAAATAGAAG----------TTATGAAG    511
                      |..|.|.||||||      |.|||| |||||          |||....|
BPUM_2003___c    467 -AAATCAAGCAAAAATATTTCACAAA-AGAAGATTCTTCATTTTACACTG    514

BSNT_03378___    512 TGAAAACGGAAATCAAAAAGAATATTACATTCAAAAAGCACAA--TTTGC    559
                     |||||...|||.|.|.||.|.|||||..|||.|||||||||||  |||  
BPUM_2003___c    515 TGAAAGATGAAGTGAGAAGGCATATTCAATTTAAAAAGCACAACCTTT--    562

BSNT_03378___    560 TGGCGGATCGTTATGAACAAGACTTTGA-CTTAATCGTGTGCCGCAATGT    608
                     |.||.||||.|||||||.||.|..|||| ||| |||||||||.|.|||||
BPUM_2003___c    563 TAGCAGATCCTTATGAAAAACAGCTTGATCTT-ATCGTGTGCAGAAATGT    611

BSNT_03378___    609 ATTTATTTATTTTACAGAA-AGCGCGAAGGAAGAGCTGTATTTA----AA    653
                     ..||||.||.||||||||| || ||.||.||||||    |||||    ||
BPUM_2003___c    612 CCTTATCTACTTTACAGAAGAG-GCAAAAGAAGAG----ATTTACATGAA    656

BSNT_03378___    654 AATG-GCACATAGCTTGAAGAAGAATGGAGTTCTTTTTGTCGG--CAGCA    700
                     |||| ||| ||||.||.||....|||||.||..|.|||||.||  ||  |
BPUM_2003___c    657 AATGAGCA-ATAGTTTAAAACCAAATGGCGTATTATTTGTTGGTTCA--A    703

BSNT_03378___    701 CCGAGCAAATCTTCAATCCCGAGAAGTTTGGCCTAGTC-CCAGCCGATAC    749
                     |.||.|||||.||..|.||.||.||||||||.|| |.| .|.||.|||||
BPUM_2003___c    704 CTGAACAAATTTTTCACCCGGAAAAGTTTGGACT-GACATCTGCTGATAC    752

BSNT_03378___    750 ATTCTTTTATCAAAA-AAG-----ATAG    771
                     .|||||||||||||| |||     .|||
BPUM_2003___c    753 TTTCTTTTATCAAAAGAAGGGTATGTAG    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03378 and BPUM_2003

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
