Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03370 and BPUM_1998
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence pep-align/BSNT_03370___trpD.1.24716.seq
# -bsequence pep-align/BPUM_1998___trpD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03370___trpD-BPUM_1998___trpD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03370___trpD-BPUM_1998___trpD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03370___trpD
# 2: BPUM_1998___trpD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 340
# Identity: 216/340 (63.5%)
# Similarity: 260/340 (76.5%)
# Gaps: 2/340 ( 0.6%)
# Score: 1048.5
#
#
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BSNT_03370___ 1 MNRFLQLCVDGKTLTAGEAETLMNMMMAAEMTPSEMGGILSILAHRGETP 50
||:.|...|:|..|:..||..||:.||:..:|.:|:...||||||||||.
BPUM_1998___t 1 MNQRLSALVNGGFLSENEAHQLMHDMMSGSLTDAEVAASLSILAHRGETA 50
BSNT_03370___ 51 EELAGFVKAMRAHALTVDGLPDIVDTCGTGGDGISTFNISTASAIVASAA 100
||:.|||:|||..|...:...|:||||||||||:||||||||:|||||||
BPUM_1998___t 51 EEMTGFVRAMRQKAEPAERSLDVVDTCGTGGDGLSTFNISTAAAIVASAA 100
BSNT_03370___ 101 GAKIAKHGNRSVSSKSGSADVLEELEVSIQTTPEKVKSSIETNNMGFLFA 150
|||||||||||||||||||||||.|.:.||:|||:.:..|:..|||||||
BPUM_1998___t 101 GAKIAKHGNRSVSSKSGSADVLECLGIHIQSTPEETRRQIQEKNMGFLFA 150
BSNT_03370___ 151 PLYYSSMKHVAGTRKELGFRTVFNLLGPLSNPLQAKRQVIGVYSVEKAGL 200
|:|:||||.||..||:|||||||||||||.:|:|||:|:||||:.|||.|
BPUM_1998___t 151 PMYHSSMKQVAAVRKQLGFRTVFNLLGPLCHPMQAKKQIIGVYAKEKAKL 200
BSNT_03370___ 201 MASALETFQPKHVMFVSSRDGLDELSITAPTDVIELKDGERREYTVSPED 250
||.||...:|:||:||...||||||:|||.:.|||||.|:..|||::|||
BPUM_1998___t 201 MAEALAPLEPEHVLFVCGEDGLDELTITANSYVIELKKGDMTEYTLNPED 250
BSNT_03370___ 251 FGFTNGRLEDLQVQSPKESAYLIQNIFENKSSSSALSITAFNAGAAIYTA 300
||...|.|.|:|||||:|||.|||||..:::..:.|.|||.|||||:|.|
BPUM_1998___t 251 FGLAKGYLSDIQVQSPEESAKLIQNILNHQTEGAPLHITALNAGAALYVA 300
BSNT_03370___ 301 GITASLKEGTELALETITSGGAAAQLERLKQ--KEEEIYA 338
|.:.||..||..|||||.:|.|..||.|||| |||||||
BPUM_1998___t 301 GKSESLMAGTLKALETIKNGAAKEQLARLKQKTKEEEIYA 340
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