Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03370 and BPUM_1998

See Amino acid alignment / Visit BSNT_03370 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_03370___trpD.1.24716.seq
#    -bsequence dna-align/BPUM_1998___trpD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03370___trpD-BPUM_1998___trpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03370___trpD-BPUM_1998___trpD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03370___trpD
# 2: BPUM_1998___trpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1096
# Identity:     695/1096 (63.4%)
# Similarity:   695/1096 (63.4%)
# Gaps:         152/1096 (13.9%)
# Score: 1909.0
# 
#
#=======================================

BSNT_03370___      1 ATGAA-CAG---ATTTCTACAATTGTGCGTTGACGGAAAAACCCTTACTG     46
                     ||||| |||   .|.||..||.||    |||.||||    |..|||.||.
BPUM_1998___t      1 ATGAATCAGCGACTATCAGCACTT----GTTAACGG----AGGCTTCCTA     42

BSNT_03370___     47 CCGG----TGAGGCTGA--AACGC-TG-ATGAATATGATGA-TGG-----     82
                     .|.|    |||.||..|  |||.| || ||| ||||||||| |||     
BPUM_1998___t     43 TCAGAAAATGAAGCACATCAACTCATGCATG-ATATGATGAGTGGTTCTT     91

BSNT_03370___     83 ---CAGCGGAAATGACTCCTTCTGAAATGGGTG---GTATATTGTCAATT    126
                        |||     |||       |.|||.|.|..|   ||.||   ||.|||
BPUM_1998___t     92 TAACAG-----ATG-------CCGAAGTCGCAGCAAGTCTA---TCGATT    126

BSNT_03370___    127 CTTGCTCATCGGGGGGAGACGCCAGAAGAGCTTGCGGGTTTTGTGAAGGC    176
                     .|.||.|||.|.||.||.||..|.||.||..|..||||.||.||||.|||
BPUM_1998___t    127 TTAGCGCATAGAGGAGAAACCGCTGAGGAAATGACGGGCTTCGTGAGGGC    176

BSNT_03370___    177 AATGCGGGCACACGCTCTTA----CAGTCGATGGACTTCCTGATATTGTT    222
                     .||||||..|.|.||    |    |||..||..||...|.||||.|.|||
BPUM_1998___t    177 CATGCGGCAAAAAGC----AGAACCAGCGGAAAGATCACTTGATGTCGTT    222

BSNT_03370___    223 GATACATGCGGAACAGGGGGAGACGGTATTTCCACTTTTAATATCTCAAC    272
                     ||.||||||||.||||||||.||.||..||||.||.||.|||||.|||||
BPUM_1998___t    223 GACACATGCGGTACAGGGGGCGATGGACTTTCTACATTCAATATATCAAC    272

BSNT_03370___    273 GGCCTCGGCAATTGTTGCCTCGGCAGCTGGCGCGAAAATCGCTAAGCATG    322
                     .||..|.||||||||.||.||.||.|||||.||.|||||.||.||.||.|
BPUM_1998___t    273 TGCAGCTGCAATTGTAGCTTCTGCCGCTGGTGCTAAAATTGCAAAACACG    322

BSNT_03370___    323 GCAATCGCTCTGTCTCTTCTAAAAGCGGAAGCGCTGATGTTTTAGAGGAG    372
                     |.|||||.||.||.|||||||||||.|||||.||.||.||..|||||...
BPUM_1998___t    323 GAAATCGTTCAGTTTCTTCTAAAAGTGGAAGTGCCGACGTCCTAGAGTGC    372

BSNT_03370___    373 CTAGAGGT-TTC-TATTCAAACCACTCCCGAA-----AAG--GTCAAAAG    413
                     ||  .||| ||| .||||||.|||||||.|||     |||  |.||||..
BPUM_1998___t    373 CT--TGGTATTCACATTCAATCCACTCCAGAAGAAACAAGAAGACAAATA    420

BSNT_03370___    414 CAGCATTGAAACAAACAACATGGGATTTCTTTTTGCGCCGCTTTACTATT    463
                     ||      |.|.||| ||||||||.|||.|.|||||.||..|.|||.|||
BPUM_1998___t    421 CA------AGAGAAA-AACATGGGCTTTTTATTTGCACCAATGTACCATT    463

BSNT_03370___    464 CGTCTATGAAACATGTAGCAG--GTACTAGAAAAGAGCTAGGTTTCAGAA    511
                     |.|||||||||||.|||||.|  ||.|  |.||..|.||.||.|||||.|
BPUM_1998___t    464 CATCTATGAAACAAGTAGCGGCTGTCC--GCAAGCAACTTGGCTTCAGGA    511

BSNT_03370___    512 CGGTATTTAATCTGCTTGGGCCGCTCAGCAATCCTTTACAGGCGAAGCGT    561
                     |||||||||||.|..|.||||||||..||.|.||..|.||.||.||....
BPUM_1998___t    512 CGGTATTTAATTTATTAGGGCCGCTTTGCCACCCGATGCAAGCCAAAAAG    561

BSNT_03370___    562 CAGGTGATTGGGGTCTATTCTGTTGAAAAAGCTGGACTGATGGC--AAGC    609
                     ||..|.||.||.||.|||.|....|||||.||...|.|.|||||  ||||
BPUM_1998___t    562 CAAATCATCGGTGTGTATGCAAAGGAAAAGGCAAAATTAATGGCGGAAGC    611

BSNT_03370___    610 ----GCACTGGAGACGTTTCAGCCGAAGCACGTTATGTTTGTATCAAGCC    655
                         ||.|      |.||..||||..||||.||..|||||||||   ||.
BPUM_1998___t    612 CCTTGCCC------CATTAGAGCCAGAGCATGTCCTGTTTGTAT---GCG    652

BSNT_03370___    656 G---TGACGGTTTAGATGAGCTTTCAATTACAGCACCGACCGACGTGATT    702
                     |   .|||||..|.|||||.||..|||||||||||....|..|.||||||
BPUM_1998___t    653 GGGAAGACGGGCTGGATGAACTAACAATTACAGCAAATTCGTATGTGATT    702

BSNT_03370___    703 GAATT----AAAG--GAC-GGAGAGCGCCGGGAATATACCGTTTCACCC-    744
                     |||.|    ||||  ||| .||.|       ||||||| ||.|..|||| 
BPUM_1998___t    703 GAACTCAAAAAAGGTGACATGACA-------GAATATA-CGCTAAACCCA    744

BSNT_03370___    745 GAAGATTTCGGTTTCACAAATGGCAGACTTGA--AGATTTACAGGTGCAG    792
                     |||||.||.||..|..|.||.|| |.|||| |  ||||.|.|||||.||.
BPUM_1998___t    745 GAAGACTTTGGACTGGCGAAAGG-ATACTT-ATCAGATATTCAGGTCCAA    792

BSNT_03370___    793 TCACCGAAAGAGAGCGCCTATCTCATTCAGAATATTTTTGAA-AATAAAA    841
                     |||||..|||||||.||..|..|.|||||||||| |.||||| .||.|||
BPUM_1998___t    793 TCACCAGAAGAGAGTGCAAAATTGATTCAGAATA-TATTGAATCATCAAA    841

BSNT_03370___    842 GCAGCAGTTCCGCTTTATC-TATTACGGCTTTTAATGCGGGAGCTGCGAT    890
                      |||.||...|||.|..|| ||||||.||..|.|||||.|||||.||  |
BPUM_1998___t    842 -CAGAAGGGGCGCCTCTTCATATTACAGCGCTGAATGCCGGAGCGGC--T    888

BSNT_03370___    891 TTACA---CGGCGGGAA---TTACCGCCTCACTGAAGGAA----GGAACG    930
                     |||.|   ||..||.||   |.|..||||||..|.|||||    ..||  
BPUM_1998___t    889 TTATATGTCGCAGGCAAGTCTGAAAGCCTCATGGCAGGAACATTAAAA--    936

BSNT_03370___    931 GAGCTGGCGTTAGAGACGATTACAAGCGGAGGCGCTGCC---GCGCAGCT    977
                           ||.|||||.|||||||.||.||||   ||.|||   |..||..|
BPUM_1998___t    937 ------GCATTAGAAACGATTAAAAACGGA---GCAGCCAAAGAACAATT    977

BSNT_03370___    978 TGAACGACTAAAGCA------GAAAGAGGAAGAGATCTATGCTTGA   1017
                     .|.|||..||||.||      |||||||||||||||||||||||.|
BPUM_1998___t    978 GGCACGTTTAAAACAAAAAACGAAAGAGGAAGAGATCTATGCTTAA   1023


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