Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03370 and BPUM_1998
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_03370___trpD.1.24716.seq
# -bsequence dna-align/BPUM_1998___trpD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03370___trpD-BPUM_1998___trpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03370___trpD-BPUM_1998___trpD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03370___trpD
# 2: BPUM_1998___trpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1096
# Identity: 695/1096 (63.4%)
# Similarity: 695/1096 (63.4%)
# Gaps: 152/1096 (13.9%)
# Score: 1909.0
#
#
#=======================================
BSNT_03370___ 1 ATGAA-CAG---ATTTCTACAATTGTGCGTTGACGGAAAAACCCTTACTG 46
||||| ||| .|.||..||.|| |||.|||| |..|||.||.
BPUM_1998___t 1 ATGAATCAGCGACTATCAGCACTT----GTTAACGG----AGGCTTCCTA 42
BSNT_03370___ 47 CCGG----TGAGGCTGA--AACGC-TG-ATGAATATGATGA-TGG----- 82
.|.| |||.||..| |||.| || ||| ||||||||| |||
BPUM_1998___t 43 TCAGAAAATGAAGCACATCAACTCATGCATG-ATATGATGAGTGGTTCTT 91
BSNT_03370___ 83 ---CAGCGGAAATGACTCCTTCTGAAATGGGTG---GTATATTGTCAATT 126
||| ||| |.|||.|.|..| ||.|| ||.|||
BPUM_1998___t 92 TAACAG-----ATG-------CCGAAGTCGCAGCAAGTCTA---TCGATT 126
BSNT_03370___ 127 CTTGCTCATCGGGGGGAGACGCCAGAAGAGCTTGCGGGTTTTGTGAAGGC 176
.|.||.|||.|.||.||.||..|.||.||..|..||||.||.||||.|||
BPUM_1998___t 127 TTAGCGCATAGAGGAGAAACCGCTGAGGAAATGACGGGCTTCGTGAGGGC 176
BSNT_03370___ 177 AATGCGGGCACACGCTCTTA----CAGTCGATGGACTTCCTGATATTGTT 222
.||||||..|.|.|| | |||..||..||...|.||||.|.|||
BPUM_1998___t 177 CATGCGGCAAAAAGC----AGAACCAGCGGAAAGATCACTTGATGTCGTT 222
BSNT_03370___ 223 GATACATGCGGAACAGGGGGAGACGGTATTTCCACTTTTAATATCTCAAC 272
||.||||||||.||||||||.||.||..||||.||.||.|||||.|||||
BPUM_1998___t 223 GACACATGCGGTACAGGGGGCGATGGACTTTCTACATTCAATATATCAAC 272
BSNT_03370___ 273 GGCCTCGGCAATTGTTGCCTCGGCAGCTGGCGCGAAAATCGCTAAGCATG 322
.||..|.||||||||.||.||.||.|||||.||.|||||.||.||.||.|
BPUM_1998___t 273 TGCAGCTGCAATTGTAGCTTCTGCCGCTGGTGCTAAAATTGCAAAACACG 322
BSNT_03370___ 323 GCAATCGCTCTGTCTCTTCTAAAAGCGGAAGCGCTGATGTTTTAGAGGAG 372
|.|||||.||.||.|||||||||||.|||||.||.||.||..|||||...
BPUM_1998___t 323 GAAATCGTTCAGTTTCTTCTAAAAGTGGAAGTGCCGACGTCCTAGAGTGC 372
BSNT_03370___ 373 CTAGAGGT-TTC-TATTCAAACCACTCCCGAA-----AAG--GTCAAAAG 413
|| .||| ||| .||||||.|||||||.||| ||| |.||||..
BPUM_1998___t 373 CT--TGGTATTCACATTCAATCCACTCCAGAAGAAACAAGAAGACAAATA 420
BSNT_03370___ 414 CAGCATTGAAACAAACAACATGGGATTTCTTTTTGCGCCGCTTTACTATT 463
|| |.|.||| ||||||||.|||.|.|||||.||..|.|||.|||
BPUM_1998___t 421 CA------AGAGAAA-AACATGGGCTTTTTATTTGCACCAATGTACCATT 463
BSNT_03370___ 464 CGTCTATGAAACATGTAGCAG--GTACTAGAAAAGAGCTAGGTTTCAGAA 511
|.|||||||||||.|||||.| ||.| |.||..|.||.||.|||||.|
BPUM_1998___t 464 CATCTATGAAACAAGTAGCGGCTGTCC--GCAAGCAACTTGGCTTCAGGA 511
BSNT_03370___ 512 CGGTATTTAATCTGCTTGGGCCGCTCAGCAATCCTTTACAGGCGAAGCGT 561
|||||||||||.|..|.||||||||..||.|.||..|.||.||.||....
BPUM_1998___t 512 CGGTATTTAATTTATTAGGGCCGCTTTGCCACCCGATGCAAGCCAAAAAG 561
BSNT_03370___ 562 CAGGTGATTGGGGTCTATTCTGTTGAAAAAGCTGGACTGATGGC--AAGC 609
||..|.||.||.||.|||.|....|||||.||...|.|.||||| ||||
BPUM_1998___t 562 CAAATCATCGGTGTGTATGCAAAGGAAAAGGCAAAATTAATGGCGGAAGC 611
BSNT_03370___ 610 ----GCACTGGAGACGTTTCAGCCGAAGCACGTTATGTTTGTATCAAGCC 655
||.| |.||..||||..||||.||..||||||||| ||.
BPUM_1998___t 612 CCTTGCCC------CATTAGAGCCAGAGCATGTCCTGTTTGTAT---GCG 652
BSNT_03370___ 656 G---TGACGGTTTAGATGAGCTTTCAATTACAGCACCGACCGACGTGATT 702
| .|||||..|.|||||.||..|||||||||||....|..|.||||||
BPUM_1998___t 653 GGGAAGACGGGCTGGATGAACTAACAATTACAGCAAATTCGTATGTGATT 702
BSNT_03370___ 703 GAATT----AAAG--GAC-GGAGAGCGCCGGGAATATACCGTTTCACCC- 744
|||.| |||| ||| .||.| ||||||| ||.|..||||
BPUM_1998___t 703 GAACTCAAAAAAGGTGACATGACA-------GAATATA-CGCTAAACCCA 744
BSNT_03370___ 745 GAAGATTTCGGTTTCACAAATGGCAGACTTGA--AGATTTACAGGTGCAG 792
|||||.||.||..|..|.||.|| |.|||| | ||||.|.|||||.||.
BPUM_1998___t 745 GAAGACTTTGGACTGGCGAAAGG-ATACTT-ATCAGATATTCAGGTCCAA 792
BSNT_03370___ 793 TCACCGAAAGAGAGCGCCTATCTCATTCAGAATATTTTTGAA-AATAAAA 841
|||||..|||||||.||..|..|.|||||||||| |.||||| .||.|||
BPUM_1998___t 793 TCACCAGAAGAGAGTGCAAAATTGATTCAGAATA-TATTGAATCATCAAA 841
BSNT_03370___ 842 GCAGCAGTTCCGCTTTATC-TATTACGGCTTTTAATGCGGGAGCTGCGAT 890
|||.||...|||.|..|| ||||||.||..|.|||||.|||||.|| |
BPUM_1998___t 842 -CAGAAGGGGCGCCTCTTCATATTACAGCGCTGAATGCCGGAGCGGC--T 888
BSNT_03370___ 891 TTACA---CGGCGGGAA---TTACCGCCTCACTGAAGGAA----GGAACG 930
|||.| ||..||.|| |.|..||||||..|.||||| ..||
BPUM_1998___t 889 TTATATGTCGCAGGCAAGTCTGAAAGCCTCATGGCAGGAACATTAAAA-- 936
BSNT_03370___ 931 GAGCTGGCGTTAGAGACGATTACAAGCGGAGGCGCTGCC---GCGCAGCT 977
||.|||||.|||||||.||.|||| ||.||| |..||..|
BPUM_1998___t 937 ------GCATTAGAAACGATTAAAAACGGA---GCAGCCAAAGAACAATT 977
BSNT_03370___ 978 TGAACGACTAAAGCA------GAAAGAGGAAGAGATCTATGCTTGA 1017
.|.|||..||||.|| |||||||||||||||||||||||.|
BPUM_1998___t 978 GGCACGTTTAAAACAAAAAACGAAAGAGGAAGAGATCTATGCTTAA 1023
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