Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03331 and BPUM_1967

See DNA alignment / Visit BSNT_03331 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence pep-align/BSNT_03331___dnaD.1.24716.seq
#    -bsequence pep-align/BPUM_1967___dnaD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03331___dnaD-BPUM_1967___dnaD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03331___dnaD-BPUM_1967___dnaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03331___dnaD
# 2: BPUM_1967___dnaD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 236
# Identity:     135/236 (57.2%)
# Similarity:   183/236 (77.5%)
# Gaps:           6/236 ( 2.5%)
# Score: 723.0
# 
#
#=======================================

BSNT_03331___      1 MKKQQFIDMQEQGTSTIPNLLLTHYKQLGLNETELILLLKIKMHLEKGSY     50
                     |.:||||:||:.|::::||||:.||:||||||::::::|||||:.|:|.:
BPUM_1967___d      1 MNRQQFINMQQMGSTSLPNLLIAHYEQLGLNESQMMVMLKIKMNEEQGVF     50

BSNT_03331___     51 FPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQ    100
                     |.|..:|..||:||.|||...::..|||||:.|:..||.:||:.::||::
BPUM_1967___d     51 FQTFEELSHGMTISAEECAYMVQHLIQKGFISIQPFEDGSGIQHDRYSVE    100

BSNT_03331___    101 PLWGKLYEYIQLAQNQTQERKAEGEQKSLYTIFEEEFARPLSPLECETLA    150
                     ||||.||::::..|.:..::.....:||||.:||:||.|||||||.|||:
BPUM_1967___d    101 PLWGVLYDFLEAKQAKEGQKLHVQAEKSLYALFEDEFGRPLSPLEGETLS    150

BSNT_03331___    151 IWQDQDQHDAQLIKHALKEAVLSGKLSFRYIDRILFEWKKNGLKTVEQAK    200
                     ||.|||.|||::|:.||:||||||||:|||||||||||||.||||.|:||
BPUM_1967___d    151 IWMDQDHHDAEMIRLALREAVLSGKLNFRYIDRILFEWKKKGLKTAEEAK    200

BSNT_03331___    201 IHSQKFRRVQAKQNEPQKE----YKRQVPFYNWLEQ    232
                     .|||.||..|  :..|.||    |||||||||||||
BPUM_1967___d    201 EHSQHFRSQQ--KAPPSKEEASTYKRQVPFYNWLEQ    234


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