Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03331 and BPUM_1967
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_03331___dnaD.1.24716.seq
# -bsequence dna-align/BPUM_1967___dnaD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03331___dnaD-BPUM_1967___dnaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03331___dnaD-BPUM_1967___dnaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03331___dnaD
# 2: BPUM_1967___dnaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 771
# Identity: 472/771 (61.2%)
# Similarity: 472/771 (61.2%)
# Gaps: 138/771 (17.9%)
# Score: 1390.5
#
#
#=======================================
BSNT_03331___ 1 ATGAAAAAACAGCAATTTATTGATATGCAGGAGCA----GGGAACATCAA 46
|||||.|..||||||||||||.|||||| |||| ||| ||.|
BPUM_1967___d 1 ATGAATAGGCAGCAATTTATTAATATGC---AGCAAATGGGG----TCGA 43
BSNT_03331___ 47 CCA---TCCCCAATCTTCTGCTTACGCATTATAAACAGCTTGGGCTTAAT 93
||| |.||.|||.|.|||.||.|.||||||.|.|||.|.||.||.|||
BPUM_1967___d 44 CCAGTTTGCCTAATTTGCTGATTGCTCATTATGAGCAGTTAGGACTGAAT 93
BSNT_03331___ 94 GAAACAGAACTTATTCTGCTGTTAAAAATTAAAATGCATTTAGAAAAAGG 143
|||.||.||.|.||..||.||.|.||.|||||||||.||..||||.||||
BPUM_1967___d 94 GAATCACAAATGATGGTGATGCTTAAGATTAAAATGAATGAAGAACAAGG 143
BSNT_03331___ 144 ATCATATTTTCCTACACCGAATCAGCTGCAG--------GAAGGTATGTC 185
|.|.|||.|.| ||.||..||.|| .|.||.|||.|
BPUM_1967___d 144 ----TGTGTTCTTTC----AAACATTTGAAGAGCTTTCCCATGGGATGAC 185
BSNT_03331___ 186 AATTTCTGTTGAAGAATGCACAAACAGATTGCGGAT-----------GTT 224
.|||||.|.||||||.|| ||||.|| .||
BPUM_1967___d 186 CATTTCAGCTGAAGAGTG-----------TGCGTATATGGTTCAGCATTT 224
BSNT_03331___ 225 TATTCAAAAAGGCTTTCTGTTTATTGAAGAATGC-----GAGGATCAAAA 269
.|||||||||||.|||.|.|..|||.| || |||| |
BPUM_1967___d 225 AATTCAAAAAGGATTTATTTCGATTCA-----GCCGTTTGAGG------A 263
BSNT_03331___ 270 CGG----------CATCAAATTTGAGAAATATTCTCTTCAGCCTTTATGG 309
||| ||.|| |||....||.||..||.||||.||||||
BPUM_1967___d 264 CGGGTCTGGTATTCAGCA----TGACCGTTACTCAGTTGAGCCATTATGG 309
BSNT_03331___ 310 GGGAAGCTGTACGAATATATTCAGCTTGCACAGAATCAAACACAGGAAAG 359
||...|.||||.||.|.|.|..|| ||| ||.|||.|..|||||.|
BPUM_1967___d 310 GGCGTGTTGTATGACTTTTTAGAG---GCA---AAACAAGCGAAGGAAGG 353
BSNT_03331___ 360 ---AAAA------GCAGAAGGGGAACAAAAAAGCCTTTATA--CCATTTT 398
|||| |.|.||| |..|||||.||||||| |..|.||
BPUM_1967___d 354 TCAAAAACTCCATGTACAAG-----CTGAAAAGTCTTTATATGCTTTATT 398
BSNT_03331___ 399 TGAGGAAGAGTTCGCAAGGCCGTTATCGCCT-TTGGAGTGTGAAACGCTG 447
|||.||.||.||.|..||||||.|.||.||| |||.|| |.|||||.||.
BPUM_1967___d 399 TGAAGATGAATTTGGCAGGCCGCTTTCTCCTCTTGAAG-GAGAAACACTC 447
BSNT_03331___ 448 GCGATCTGGCAGGACCAGGATCAGCATGACGCACAACTGATCAAACACGC 497
.|.||||||..|||.||.||.||.|||||.||..||.|||||...|..||
BPUM_1967___d 448 TCCATCTGGATGGATCAAGACCATCATGATGCTGAAATGATCCGCCTAGC 497
BSNT_03331___ 498 GTTAAAAGAGGCTGTACTATCAGGAAAACTCAGTTTCCGCTACATTGACC 547
.||||.|||.||.||..|||||||||||.|.|.||||||.||.||.||||
BPUM_1967___d 498 ATTAAGAGAAGCGGTGTTATCAGGAAAATTAAATTTCCGTTATATCGACC 547
BSNT_03331___ 548 GCATTTTGTTTGAATGGAAGAAAAACGGGCTTAAAACTGTGGAGCAGGCA 597
|.|||.|||||||.|||||.||.||.|||||.|||||.|.|||..|.|||
BPUM_1967___d 548 GAATTCTGTTTGAGTGGAAAAAGAAAGGGCTGAAAACAGCGGAAGAAGCA 597
BSNT_03331___ 598 AAAATACACAGCCAAAAATTCCGGCGTGTAC-AAGCAAAGCAAAATGAAC 646
|||...||.|||||..|.|||| ||.| .|||||| ||.
BPUM_1967___d 598 AAAGAGCATAGCCAGCATTTCC-----GTTCTCAGCAAA--------AAG 634
BSNT_03331___ 647 CGC---------AAAAAGAG---------TATAAAAGGCAGGTTCCTTTT 678
||| ||.||||| |||||..|.||.|||||||||
BPUM_1967___d 635 CGCCACCTTCAAAAGAAGAGGCGTCAACATATAAGCGACAAGTTCCTTTT 684
BSNT_03331___ 679 TACAATTGGCTTGAACAATAA 699
||.||||||||.|||||||||
BPUM_1967___d 685 TATAATTGGCTGGAACAATAA 705
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