Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03312 and BPUM_1957

See DNA alignment / Visit BSNT_03312 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:48
# Commandline: needle
#    -asequence pep-align/BSNT_03312___ypqA.1.24716.seq
#    -bsequence pep-align/BPUM_1957.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03312___ypqA-BPUM_1957.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03312___ypqA-BPUM_1957.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03312___ypqA
# 2: BPUM_1957
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 139
# Identity:      45/139 (32.4%)
# Similarity:    85/139 (61.2%)
# Gaps:           0/139 ( 0.0%)
# Score: 227.0
# 
#
#=======================================

BSNT_03312___      1 MEFYDDKKNELQKKEEIITEAIDTLFQSSAFGNLINGFQNLINSSLKDVQ     50
                     |:...:||:||...|:|:.|||:..|.||.|..::|..:.|:.:|.....
BPUM_1957          1 MKHEGEKKHELLANEDILYEAIEQFFASSPFHEILNSAEALMTTSHSLAS     50

BSNT_03312___     51 TTILVRERDTGLYIDITIPATFRDGEIVVDVKSRYLHVTLQEKQKHQNEA    100
                     .|..|.|.:..:||.|..|..|.:|:|.::||::|||:::||..|....:
BPUM_1957         51 ITTDVTEDEQFVYIAIQFPDHFVEGDIALEVKAQYLHLSVQETIKTDTAS    100

BSNT_03312___    101 TFTSMTRTVQLPYEVRQEDMETSWNEQTMTLFFPKNKHE    139
                     :::|.|:|:.:|.::.:.:|::.|.:||:.:..||.:.:
BPUM_1957        101 SYSSFTKTILMPAKIDETNMKSVWKDQTLRVTAPKQRAQ    139


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.