Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03312 and BPUM_1957
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_03312___ypqA.1.24716.seq
# -bsequence dna-align/BPUM_1957.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03312___ypqA-BPUM_1957.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03312___ypqA-BPUM_1957.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03312___ypqA
# 2: BPUM_1957
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 511
# Identity: 245/511 (47.9%)
# Similarity: 245/511 (47.9%)
# Gaps: 182/511 (35.6%)
# Score: 479.5
#
#
#=======================================
BSNT_03312___ 1 TTGGAATTCTATGATGACAAAAAGA---ACGAACTGCAAAAGAAAGAAGA 47
.||.|| .||||.|.|.|||||| |.|||.|||.....||.|||||
BPUM_1957 1 ATGAAA---CATGAAGGCGAAAAGAAACATGAATTGCTGGCTAATGAAGA 47
BSNT_03312___ 48 AAT----CATAACGGAGGCAATCGACACTCTTTTTC-AATCCTCAGCGTT 92
.|| .|| ||.||.||.|| ||..|||||| .||||||..||
BPUM_1957 48 TATTCTCTAT----GAAGCGATTGA-ACAATTTTTCGCATCCTCCCCG-- 90
BSNT_03312___ 93 CGGCAACCTTATAAACGGATTTCA-GAACCTAATCAACTCGAGTTTAAA- 140
||||| || ||..|||||
BPUM_1957 91 -------------------TTTCATGA-------------GATATTAAAT 108
BSNT_03312___ 141 -----GGATGTGCAGACGACCATA---------CTTG------TTA---- 166
|||.|.||..|.|||||.| |||| |||
BPUM_1957 109 AGTGCGGAGGCGCTCATGACCACATCGCATTCTCTTGCATCGATTACGAC 158
BSNT_03312___ 167 ----GAGAAAGA-GATACTGGGC------TGTATATCGATATTACCA--T 203
|.||.||| || ||.|| |||||||||..|| ||| |
BPUM_1957 159 CGATGTGACAGAGGA---TGAGCAGTTTGTGTATATCGCAAT--CCAATT 203
BSNT_03312___ 204 TCCGGCGAC--GTTTCGAGATGGCGAGATCGTCGTTGATGTTAAATCGAG 251
||| |||| .|||...||.|||||.||||...|.||.||.|||.|...
BPUM_1957 204 TCC--CGACCATTTTGTCGAAGGCGATATCGCACTAGAAGTAAAAGCCCA 251
BSNT_03312___ 252 GTATCTCCATGTAACACTCCAAGA-------AAAACAGAAACACCAAAAT 294
.|||.|.||..||.|..|.||||| |||||.||.|||
BPUM_1957 252 ATATTTACACTTATCCGTGCAAGAAACAATCAAAACGGATACA------- 294
BSNT_03312___ 295 GAGGCTACCT----TTACAAGCATGACAAGAACGGTTCAGCTGCCTT-AT 339
|||.||| || |.|||.|.||||.|||..|| || ||
BPUM_1957 295 ---GCTTCCTCGTATT-CGAGCTTTACAAAAACCATT--------TTAAT 332
BSNT_03312___ 340 GAAGTTCGCCAAGAAGATATG----------GAAA--CGTCTTGGAACGA 377
| .||.|||.||.|.||| |||| ||| .|||||.||
BPUM_1957 333 G----CCGGCAAAAATAGATGAGACGAACATGAAAAGCGT-GTGGAAAGA 377
BSNT_03312___ 378 GCAGAC---------AATGACACTTTTCTTTCCAAAAAATAAGCATGAAT 418
.||.|| .|.|.|| ||| |||| ||.
BPUM_1957 378 TCAAACGCTTCGTGTGACGGCA---------CCA------AAGC---AAA 409
BSNT_03312___ 419 GA--------- 420
||
BPUM_1957 410 GAGCCCAATAG 420
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