Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03243 and BPUM_1908
See
DNA alignment /
Visit
BSNT_03243 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence pep-align/BSNT_03243___ypmQ.1.24716.seq
# -bsequence pep-align/BPUM_1908___ypmQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03243___ypmQ-BPUM_1908___ypmQ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03243___ypmQ-BPUM_1908___ypmQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03243___ypmQ
# 2: BPUM_1908___ypmQ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 210
# Identity: 126/210 (60.0%)
# Similarity: 158/210 (75.2%)
# Gaps: 18/210 ( 8.6%)
# Score: 672.5
#
#
#=======================================
BSNT_03243___ 1 MKVIKGLTAGLIF----LFLCACGGQQIKNPLNYEVEPFTFQNQDGKNVS 46
|...:|.:.|.:. |.|.:|...|||:.|||:::||.::||||:.||
BPUM_1908___y 1 MLNKRGASLGALMIISVLLLVSCSNGQIKDALNYQIQPFEYENQDGQKVS 50
BSNT_03243___ 47 LESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSV 96
|:.|||:||:||||||:|||||||||||||:|||::|.|.:|.|||||||
BPUM_1908___y 51 LDDLKGKVWVADFIFTSCETICPPMTAHMTELQKRVKEEKLDARIISFSV 100
BSNT_03243___ 97 DPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKP 146
|||.|.||:||:||..|||||.|||||||||||.||:||:||||.|||||
BPUM_1908___y 101 DPEVDSPKKLKEFAKAYPLSFKNWDFLTGYSQSAIEKFAMKSFKTIVKKP 150
BSNT_03243___ 147 EGEDQVIHQSSFWLVGPNGKVLKDYNGVENTPYDEIIADVKSAGALKEVR 196
|.||||||||.|:||...|||:|:|:||:|||||:||.|:|:. :|
BPUM_1908___y 151 EDEDQVIHQSLFFLVDQEGKVMKNYDGVQNTPYDDIIKDIKTL-----IR 195
BSNT_03243___ 197 RLGICKSSKT 206
.
BPUM_1908___y 196 S--------- 196
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.