Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03243 and BPUM_1908
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_03243___ypmQ.1.24716.seq
# -bsequence dna-align/BPUM_1908___ypmQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03243___ypmQ-BPUM_1908___ypmQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03243___ypmQ-BPUM_1908___ypmQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03243___ypmQ
# 2: BPUM_1908___ypmQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 660
# Identity: 412/660 (62.4%)
# Similarity: 412/660 (62.4%)
# Gaps: 108/660 (16.4%)
# Score: 1236.5
#
#
#=======================================
BSNT_03243___ 1 ATGAAGGTTATC--AAGGGG--------TTAACGGCTGGGCTGA------ 34
|.|.|||.| |||||| || |.||.|||.|
BPUM_1908___y 1 ---ATGCTTAACAAAAGGGGAGCCTCACTT----GGTGCGCTTATGATCA 43
BSNT_03243___ 35 ------TTTTTCTGTTTTTGTGTGCATGCGGA---GGACAGCAGATTAAA 75
|..||| ||||.||.| ||||...| ||| ||.||.|||
BPUM_1908___y 44 TAAGCGTGCTTC--TTTTAGTCT-CATGTTCAAATGGA---CAAATCAAA 87
BSNT_03243___ 76 AATCCGCTCAATTACGAGGTGGAGCCTTTTACATTTCAAAACCAAGACGG 125
.||.||.|.|||||..|..|..||||.|||...|.|.||||.||.||.||
BPUM_1908___y 88 GATGCGTTAAATTATCAAATACAGCCGTTTGAGTATGAAAATCAGGATGG 137
BSNT_03243___ 126 -CAAGAACGTTTCTTTAGA-GAGTTTAAAAGGAGAAGTATGGCTGGCGGA 173
||| ||.||.||.||||| || |||.||.||..||||||||.||||.||
BPUM_1908___y 138 ACAA-AAGGTGTCGTTAGATGA-TTTGAAGGGGAAAGTATGGGTGGCAGA 185
BSNT_03243___ 174 TTTTATTTTTACCAATTGTGAAACTATATGTCCGCCAATGACCGCTCATA 223
||||||.||.||.|..||||||||.||.||||||||.||||||||.||||
BPUM_1908___y 186 TTTTATATTCACAAGCTGTGAAACGATCTGTCCGCCGATGACCGCGCATA 235
BSNT_03243___ 224 TGACCGATCTGCAAAAAAAACTGAAAGCCGAAAATATAGATGTCCGCATC 273
||||.||.||||||||||...|.||||..|||||..|.||||..||.|||
BPUM_1908___y 236 TGACAGAGCTGCAAAAAAGGGTAAAAGAAGAAAAATTGGATGCACGTATC 285
BSNT_03243___ 274 ATATCATTTAGTGTTGATCCAGAAAACGATAAGCCGAAACAGCTGAAGAA 323
||.||.|||||.||.||.||.||....|||...||||||.||||.||..|
BPUM_1908___y 286 ATTTCCTTTAGCGTGGACCCGGAGGTAGATTCACCGAAAAAGCTAAAAGA 335
BSNT_03243___ 324 ATTTGCCGCAAA---TTATCCATTATCTTTTGATAACTGGGATTTTCTCA 370
|||| ||||| .|||||.|||||.|||.|.||.||||||||.||||
BPUM_1908___y 336 ATTT---GCAAAAGCATATCCTTTATCCTTTAAAAATTGGGATTTCCTCA 382
BSNT_03243___ 371 CGGG--ATACAGCCAGAGTGAGATTGAGGAGTTCGCACTTAAGAGCTTTA 418
|.|| ||.|| |||..||.|||.||..|.||||||.|.||.|||||||
BPUM_1908___y 383 CTGGCTATTCA--CAGTCTGCGATCGAAAAATTCGCAATGAAAAGCTTTA 430
BSNT_03243___ 419 AAGCGATCGTAAAGAAGCCGGAGGGAGAGGACCAAGTGATTCATCAATC- 467
||.|.||.||.|||||.||.||.|..||.|||||||||||||||||.||
BPUM_1908___y 431 AAACCATTGTGAAGAAACCTGAAGATGAAGACCAAGTGATTCATCAGTCA 480
BSNT_03243___ 468 TTCTTTTTGGT-TAGTAG-GCCCGAACGGCAAGGTGCTGAAAGATTATAA 515
||.||||| | ||||.| .|..||| ||.||.|||.|||||.|||||.|
BPUM_1908___y 481 TTGTTTTT--TCTAGTTGATCAAGAA-GGAAAAGTGATGAAAAATTATGA 527
BSNT_03243___ 516 TGGAGTGGAAAATACACCGTACGATGAAATTATCGCCGATGTAAA----A 561
|||.||..||||.||.||.||.|||||.||.||| || |
BPUM_1908___y 528 TGGTGTACAAAACACGCCATATGATGACATCATC---------AAGGACA 568
BSNT_03243___ 562 TCAGCAGGCGCACTCAAGGAAGTTAGAAGACTAGGCATTTGCAAATCTTC 611
|||..|.||..|..| ||||.|||
BPUM_1908___y 569 TCAAAACGCTGATCC---GAAGCTAG------------------------ 591
BSNT_03243___ 612 TAAAACATGA 621
BPUM_1908___y 591 ---------- 591
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