Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03234 and BPUM_1900

See DNA alignment / Visit BSNT_03234 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence pep-align/BSNT_03234___msrB.1.24716.seq
#    -bsequence pep-align/BPUM_1900___msrB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03234___msrB-BPUM_1900___msrB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03234___msrB-BPUM_1900___msrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03234___msrB
# 2: BPUM_1900___msrB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 144
# Identity:     111/144 (77.1%)
# Similarity:   130/144 (90.3%)
# Gaps:           1/144 ( 0.7%)
# Score: 642.0
# 
#
#=======================================

BSNT_03234___      1 MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKP     50
                     |..:||:::|.|||||||||||||||||||||:|||||||:||||:||||
BPUM_1900___m      1 MTNDKEKRLKELNRMQYEVTQNNGTEPPFQNEFWDHKEEGIYVDIISGKP     50

BSNT_03234___     51 LFTSKDKFDSHCGWPSFTKPIEEEEVEEKLDTSHGMIRTEVRSRTADSHL    100
                     ||:|.||||:||||||||||:|:|||.||:|.||||:||||||:||||||
BPUM_1900___m     51 LFSSLDKFDAHCGWPSFTKPLEDEEVAEKVDKSHGMVRTEVRSKTADSHL    100

BSNT_03234___    101 GHVFNDGPGPNGLRYCINSAALRFVPKHKLKEEGYESYLHLFNK    144
                     ||||.|||||||||||||||||:|:||..|::|||....|||: 
BPUM_1900___m    101 GHVFPDGPGPNGLRYCINSAALKFIPKDDLEKEGYGDLKHLFD-    143


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.