Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03108 and BPUM_1840

See DNA alignment / Visit BSNT_03108 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence pep-align/BSNT_03108___yobU.1.24716.seq
#    -bsequence pep-align/BPUM_1840.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03108___yobU-BPUM_1840.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03108___yobU-BPUM_1840.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03108___yobU
# 2: BPUM_1840
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 172
# Identity:      73/172 (42.4%)
# Similarity:   106/172 (61.6%)
# Gaps:          27/172 (15.7%)
# Score: 379.5
# 
#
#=======================================

BSNT_03108___      1 MGFSHITHLDRKRFAGLSQRTSNALEMTEERRIPALWDQFWKQDMSALLS     50
                       ...|..|::|...|||.||:|.:|.|:||:|..||.||:.|.:..  .
BPUM_1840          1 --MYDIVTLEKKWIKGLSVRTTNEMEQTKERKIAPLWQQFFAQQLHG--G     46

BSNT_03108___     51 QAEKDKSIIALYSNYEQETNGFYTFSVGTF--QEYDDILPGPYENIDLPA     98
                     ||    .:|.|||:||::.:|.|.|:.|.|  |:.:.:       |::||
BPUM_1840         47 QA----PVIGLYSDYEKDEHGSYLFTAGQFVDQQLEQV-------IEIPA     85

BSNT_03108___     99 SAYAVFTSRIGPIEEIVLETWKEIWTWDKRHLRTFTGDFEMYDQSAAVPQ    148
                     |.||.|.:|.|||||:|||||::|||||:||.||:|||||.||:.:..|:
BPUM_1840         86 STYAKFRTRKGPIEEVVLETWQQIWTWDERHYRTYTGDFEWYDERSLDPK    135

BSNT_03108___    149 RAQVNIYVAIKK----------    160
                     .||::||:|:.:          
BPUM_1840        136 EAQIDIYIAVDEKMLAKTNSIS    157


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