Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03108 and BPUM_1840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_03108___yobU.1.24716.seq
# -bsequence dna-align/BPUM_1840.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03108___yobU-BPUM_1840.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03108___yobU-BPUM_1840.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03108___yobU
# 2: BPUM_1840
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 558
# Identity: 303/558 (54.3%)
# Similarity: 303/558 (54.3%)
# Gaps: 159/558 (28.5%)
# Score: 773.0
#
#
#=======================================
BSNT_03108___ 1 ATGGGCTTTTCACAT-----ATAAC---ACACTTAGACCGGAAACGATTT 42
|| |||.| ||| ||||| ||||..||
BPUM_1840 1 -------------ATGTACGATATCGTGACA-TTAGA---GAAAAAAT-- 31
BSNT_03108___ 43 GCCGGA------------CTGTCACAACGGACAAGCAACGCACTGGA--A 78
||| |||| .||.||||..||||.|.|||| |
BPUM_1840 32 ---GGATAAAAGGGTTATCTGT----TCGAACAACAAACGAAATGGAGCA 74
BSNT_03108___ 79 ATGACGGAAGAAAGGAGGATTCCGGCACTGTGGGACCAATTCTGGAAGCA 128
| ||..||||..|.|.||||.|..||||.|||.|.|||||.|....|||
BPUM_1840 75 A--ACAAAAGAGCGAAAGATTGCTCCACTCTGGCAGCAATTTTTTGCGCA 122
BSNT_03108___ 129 GGATATGAGCGCTCTTTTATCACAGGCTGAAAAAGACAAGAG--CATTAT 176
|.| ||| ||||.| |.||||||.| |.|.||
BPUM_1840 123 GCA-------GCT------TCACGG-------AGGACAAGCGCCCGTCAT 152
BSNT_03108___ 177 TGCCTTATATTCGAATTATGAACAAGA-GACGAATGGGTTTTATACGTT- 224
.|..||.|||||..||||||||.|||| || |.||||.|.|||| ||
BPUM_1840 153 AGGATTGTATTCAGATTATGAAAAAGATGA-GCATGGCTCTTAT---TTA 198
BSNT_03108___ 225 TTCAGTCGGAACGTTTCAGGAATACGAC--GAC-ATTCTTCCGGGACCA- 270
|| ||||.| ||| ||||.| |||.||
BPUM_1840 199 TT--------------------TACGGCTGGACAATTCGT---GGATCAG 225
BSNT_03108___ 271 ----TATGAAAACATT-----GATTTGCCGGCTTCCGCTTACGCCGTTTT 311
|| |||.|..|| |||| ||.||.|||.|.||||| .
BPUM_1840 226 CAGTTA-GAACAAGTTATAGAGATT--CCTGCGTCCACCTACGC-----A 267
BSNT_03108___ 312 CACTTCC-----AGAATCGGTCCTATTGAAGAGATTGTGCTTGAAACGTG 356
.|.|||| ||||..||.||.|||||||||.|.||..|.|||||.||
BPUM_1840 268 AAATTCCGAACGAGAAAGGGACCGATTGAAGAGGTCGTATTGGAAACATG 317
BSNT_03108___ 357 GAAGGAAATTTGGACTTGGGATAAGCGGCATCTGCGCACGTTTACAGGTG 406
|.||.||||||||||.||||||.||||.|||...|||||.|.||||||.|
BPUM_1840 318 GCAGCAAATTTGGACGTGGGATGAGCGCCATTACCGCACATATACAGGCG 367
BSNT_03108___ 407 ATTTTGAGAT-GTATGATCAAAGTGCCGCAGTACCACAGCGAGCACAAGT 455
||||||| || ||||||..||||..|...||..|||.|...|||.|||.|
BPUM_1840 368 ATTTTGA-ATGGTATGACGAAAGATCTTTAGACCCAAAAGAAGCGCAAAT 416
BSNT_03108___ 456 TAACATTTATGTAGC----GATAAAAAAA-------TAA----------- 483
|.|.||||||.|.|| |||.|||||| |||
BPUM_1840 417 TGATATTTATATTGCGGTTGATGAAAAAATGCTTGCTAAAACTAATAGTA 466
BSNT_03108___ 483 -------- 483
BPUM_1840 467 TTAGTTAA 474
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