Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_02947 and BPUM_1835

See DNA alignment / Visit BSNT_02947 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:28
# Commandline: needle
#    -asequence pep-align/BSNT_02947___yndJ.1.24716.seq
#    -bsequence pep-align/BPUM_1835.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02947___yndJ-BPUM_1835.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02947___yndJ-BPUM_1835.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02947___yndJ
# 2: BPUM_1835
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 555
# Identity:     215/555 (38.7%)
# Similarity:   319/555 (57.5%)
# Gaps:          21/555 ( 3.8%)
# Score: 1018.0
# 
#
#=======================================

BSNT_02947___      1 MQRNGIVSALCFIG-FLAAEAPDISVAEALVLLSILFFVPGIFPFVFRQS     49
                     |.:..:.|:|.|:. |:|.......:||..|||:||||:|....|..::.
BPUM_1835          1 MNKWHLASSLIFMSYFIATRFMTGLIAEFFVLLAILFFLPTALHFFKKEG     50

BSNT_02947___     50 PVRAAQFMEYGLIQCYPAAAFFAVLALVTEVGVFALIWWMYTVFIALYAI     99
                     .....:.:...|::.:|.|:..|..|.:.....||..|.:||:.:||:..
BPUM_1835         51 KKHKEERLIGFLMKAFPLASLCATAAFIYHSAWFASGWILYTILLALFGF    100

BSNT_02947___    100 LRLWETKIHRIEETSVLFGLIYLAGGGFWFFAYAAHLQIMQFGPLIILLT    149
                     .||.:..|..:.|..:....:|||.||.||:.|.|.:|:|.|.|:|:|||
BPUM_1835        101 SRLLKRGIFPLHELMIDGAWMYLALGGLWFWLYTADIQVMTFSPIIVLLT    150

BSNT_02947___    150 AVHFHYSAFLIPIFNGLLGRTIRKHRMLYSWITWVILLSPLLIALGITYS    199
                     .:|||||||.||:|.|.|||...|...||....|||||||::||:||::|
BPUM_1835        151 VIHFHYSAFFIPLFYGFLGRQQAKETALYKAAGWVILLSPVMIAVGISFS    200

BSNT_02947___    200 KTLDVIAVSIYMAAIYLHAFLVFTAAFRTKTGTFLIRLSSAVLMITIAFS    249
                     :..|..:|.:|:.|:|::..|.....||:.....|:..||.|||.||..|
BPUM_1835        201 RLFDTFSVILYVVALYIYGILCMKTRFRSTLAKGLVVFSSLVLMGTIVLS    250

BSNT_02947___    250 MIYSFGVFRQEVTLTINQMIWIHGFVNAFGVILPALIGWRIEDAKPFDAD    299
                     ::||.|:..:...::|:||||.||.:|||.||||.||||.||.  |.|..
BPUM_1835        251 LLYSAGMLMRVTYISIDQMIWFHGSINAFFVILPGLIGWLIEG--PKDQL    298

BSNT_02947___    300 SVKTF--SRIYGKRKIGEEFLANIQAE--NNARYSGLVDDMGSLRSKDFS    345
                     ..|.|  |:::|:.:     :.:.|.|  :|....||||.:..|....||
BPUM_1835        299 KQKNFPISKVHGRFQ-----MISFQEESVHNPEKLGLVDSLDELNGTTFS    343

BSNT_02947___    346 PEKLAPLILSFYEQTIEYNIKAKVTWSMWFRPLAIIYEWFSRRIGQIHLS    395
                     .::::|:|..|||..:.:.:||.|::..|.||...:.:...::|||:.|.
BPUM_1835        344 ADRVSPVIRRFYEDPMAFTLKAAVSFHWWIRPFVFLLQPLFKQIGQLFLG    393

BSNT_02947___    396 TNPDWYRMYSKIKGVHSKKDGRERVRAWIRTNEKNETIFTALYSVYRSNG    445
                     .:...|.|..::......|:.|:.||||||.|.|.:.:|.|||:::....
BPUM_1835        394 LSRHPYEMKGRLIRFQHPKEERKSVRAWIRHNVKGKQVFFALYALHHDAA    443

BSNT_02947___    446 EGYMNISLPLPFSSMTGILKPYHHQEKLVLTSRRRKSRAGDEGIYLQTRA    495
                     .|||||:||||:|.:|.||:|::.:|..:|.|...|...||||:||.|..
BPUM_1835        444 TGYMNIALPLPYSQLTAILRPFNEKEDFILKSTCPKGSTGDEGLYLHTPF    493

BSNT_02947___    496 GTCPLPLSETFLIEAAHDNKLTAVHHMWLFGIKFLTVHYSIT----HINQ    541
                     .|..||:.|:|.::...|..|||||.|.||||.|||:||.|.    |::|
BPUM_1835        494 ITMQLPMEESFHMKPETDQSLTAVHQMKLFGIPFLTIHYQIDSESHHVSQ    543

BSNT_02947___    542 PIERT    546
                          
BPUM_1835        543 -----    543


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.