Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02947 and BPUM_1835
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_02947___yndJ.1.24716.seq
# -bsequence dna-align/BPUM_1835.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02947___yndJ-BPUM_1835.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02947___yndJ-BPUM_1835.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02947___yndJ
# 2: BPUM_1835
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1945
# Identity: 1008/1945 (51.8%)
# Similarity: 1008/1945 (51.8%)
# Gaps: 617/1945 (31.7%)
# Score: 2167.5
#
#
#=======================================
BSNT_02947___ 1 ATGCAACGAAATGGCAT---------AGTCAGTGCGCTT--TGTTTTATA 39
||| |..||.|||||| |||| ||..||| |||.||||
BPUM_1835 1 ATG--AATAAGTGGCATTTGGCATCCAGTC--TGATCTTCATGTCTTAT- 45
BSNT_02947___ 40 GGATTTCTTGCAGCGGAAGCAC-CGGATATTTCAGTGGCAG-------AG 81
|||.|.|| ||| || ||||| ||.||| ||
BPUM_1835 46 ---TTTATCGC--------CACTCG----TTTCA-TGACAGGTCTGATAG 79
BSNT_02947___ 82 --GCACTCGTTTTGTTAT-----CCATTCTATTTTTCGT-------GCCG 117
|.|.| |||||||.| |||||||||||||..| |||
BPUM_1835 80 CAGAATT--TTTTGTTCTCTTGGCCATTCTATTTTTTCTTCCCACCGCC- 126
BSNT_02947___ 118 GGAATTTTCCCTTTT----------------------------------- 132
||.|.|||||
BPUM_1835 127 -----TTACACTTTTTTAAGAAAGAAGGGAAGAAACACAAGGAAGAGAGG 171
BSNT_02947___ 133 --------GTTTTTCGTCAATCGCCGGTTCGT--GCTGCTCAGTTTATGG 172
||||||..|.|| .|||..|.|.| |||.||| |||.||.
BPUM_1835 172 CTGATCGGGTTTTTAATGAA-AGCCTTTCCATTAGCTTCTC--TTTGTGC 218
BSNT_02947___ 173 AATATG-GGCTAATCCAGTGCTATCCGGCAGCCGCATTCT--TTGCGGTG 219
|| .|| .||| |.|| .|||| |||||| ||| |
BPUM_1835 219 AA-CTGCTGCT--TTCA--TCTAT----------CATTCTGCTTG----G 249
BSNT_02947___ 220 TTGGC-TCTTGTGACAGAGGTTGGAGTTTTCGCACTTATCTGGTGGATGT 268
||.|| || |||.||||.||| ||.|
BPUM_1835 250 TTCGCATC---------AGGATGGATTTT-----------------ATAT 273
BSNT_02947___ 269 ACACAGTTTTTATT-GCATTGTATGCGATCCTC-CGCCTTTG-GGAAACA 315
||| .|.||||| ||.||.|.|| |||..|| || |||| .||||..
BPUM_1835 274 ACA---ATCTTATTGGCGTTATTTG-GATTTTCTCG--TTTGCTGAAAAG 317
BSNT_02947___ 316 AAGA----------TACATAGAATCGAAGAGACATCAGTTTTGTTCGGC- 354
|.|| ||||| ||...||.|| |||.| |||
BPUM_1835 318 AGGAATCTTCCCGCTACAT-GAGCTGATGA----------TTGAT-GGCG 355
BSNT_02947___ 355 CTT--ATTTATTTGGCGGGAGGAGGATTTTGGTTTTTTGC-TTATGCTGC 401
|.| ||.|||.|.||...|||.||..|.||| ||||.|| ||||.|.||
BPUM_1835 356 CATGGATGTATCTTGCTTTAGGCGGGCTATGG-TTTTGGCTTTATACAGC 404
BSNT_02947___ 402 CCATTTGCAGATCATG-CAATTTGGCCCTCTCATCATTTTGCTT---ACT 447
..||.|.|||.|.||| ||.|||.||| .||.|||.|.||| ||.
BPUM_1835 405 AGATATACAGGTGATGACATTTTCGCC----GATTATTGTTCTTTTGACC 450
BSNT_02947___ 448 GCTGTCCACTTTCACTATTCTGCTTTTCTGATCCCGATCTTCAACGGATT 497
|.|.|.||.|||||.||||||||||||.|.||||||.|.||..|.|||||
BPUM_1835 451 GTTATTCATTTTCATTATTCTGCTTTTTTTATCCCGCTTTTTTATGGATT 500
BSNT_02947___ 498 ACT----CGGCAG-AACCATTAGAAAACATCGGATGTTGTACA-----GT 537
..| |||||| ||.||..|| |||||.| .||.|||| |.
BPUM_1835 501 TTTAGGACGGCAGCAAGCAAAAG-AAACAGC----TTTATACAAAGCGGC 545
BSNT_02947___ 538 TGGATAACATGGGTGATTTTGCTTTCGCCCCTTCTTATCGCACTGGGCAT 587
.|| |||||||||||||||.|||||..|..|.||.||..||||.||
BPUM_1835 546 GGG-----ATGGGTGATTTTGCTGTCGCCTGTAATGATTGCTGTGGGGAT 590
BSNT_02947___ 588 CACATATTCAAAAAC-----ACTTGAT---------GTCATTGCGGTTAG 623
.|..|.||| | |.||||| ||||||
BPUM_1835 591 TAGCTTTTC-----CCGTCTATTTGATACGTTCAGCGTCATT-------- 627
BSNT_02947___ 624 CATTTATATGGCGGCGATTTATCTTCAT-----GCATTTTTGGT------ 662
.|||||.|||.||| ..|||.||| ||||..||.||
BPUM_1835 628 -CTTTATGTGGTGGC----CCTCTACATATATGGCATCCTTTGTATGAAA 672
BSNT_02947___ 663 -----GTTCACGG-CAGCTTTTCGCACCAAGACGGGGACATTTCTTATTC 706
||| .||| ||.|||| |.|||.|.| ||||.||.
BPUM_1835 673 ACAAGGTT-TCGGTCAACTTT----AGCAAAAGG--------TCTTGTTG 709
BSNT_02947___ 707 GGCTTTCTTCCGCT--GTTTTAATGATAACGATTGCTTTCTCGATGATTT 754
.|.||||| .||| |||||||||...|||||.|..||.||..|..|.|
BPUM_1835 710 TGTTTTCT--AGCTTAGTTTTAATGGGGACGATCGTGTTATCACTTCTAT 757
BSNT_02947___ 755 ATTCATTTGG-----TGTATTTCGGCAAGAAGT------TACATTGACCA 793
||||...||| || || || || |||||| |.||
BPUM_1835 758 ATTCCGCTGGGATGCTG-AT----GC-----GTGTGACCTACATT-AGCA 796
BSNT_02947___ 794 TCAATCAGATGATTTGGATTCACGGTTTTGTCAATGCGTTTGGTGTTATC 843
|..||||||||||||||.||||.||...|.|||||||.|||..|||.||.
BPUM_1835 797 TTGATCAGATGATTTGGTTTCATGGCAGTATCAATGCTTTTTTTGTGATA 846
BSNT_02947___ 844 TTGCCCGCTCTCATAGGGTGGAGAATAGAGGATGCGAAGCCTTTTGATGC 893
|||||.|.|.|.||.||.|||...||.||.|...||||| |||
BPUM_1835 847 TTGCCAGGTTTGATTGGCTGGCTGATTGAAGGGCCGAAG------GAT-- 888
BSNT_02947___ 894 AGACAGTGTAAAG-------ACATTCAGCCG-TATCTACGGAAAAAGAAA 935
||.| ||||| ||.|| ||| |.|| ||||..|.|
BPUM_1835 889 ---CAAT-TAAAGCAGAAGAACTTT---CCGATTTC----GAAAGTGCA- 926
BSNT_02947___ 936 GATTGG--------AGAAGAATTTTTAGCTAACATTCAAGCTGAAA---- 973
||| |.|.||.||.|| ||||||..||||
BPUM_1835 927 ---TGGCCGGTTTCAAATGATTTCTT--------TTCAAGAGGAAAGTGT 965
BSNT_02947___ 974 --ATAAC--------GCTCGGTACAGCGG----GCTTG-TGGATGATATG 1008
||||| |||.|||..||..| ||||| ||.||.|.|||
BPUM_1835 966 GCATAACCCTGAGAAGCTGGGTTTAGTCGATTCGCTTGATGAATTAAATG 1015
BSNT_02947___ 1009 GGCAGCCTGCGTTCAAAAGA-TTTTTCACCAGAAAAACTGGCGCCGCTCA 1057
| ||.|| .||||||.|.||.|...||.|.||..|.|
BPUM_1835 1016 G--------------AACGACATTTTCAGCTGATAGGGTGTCACCTGTGA 1051
BSNT_02947___ 1058 TTCTTTCG----TTTTATGAACAAACCAT--CGAATACAATATTAAAGCA 1101
|||| |||||||||.|..|.|| |...||||.|| |||||.
BPUM_1835 1052 ----TTCGCAGATTTTATGAAGATCCTATGGCTTTTACATTA--AAAGCG 1095
BSNT_02947___ 1102 AAAGTAA-----CATGGAGCATGTGGTTTCGGCCG-----CTTGCAATTA 1141
...||.| |||.| ||||.|..||||| ||| .|||
BPUM_1835 1096 GCCGTCAGCTTTCATTG-----GTGGATAAGGCCGTTCGTCTT---TTTA 1137
BSNT_02947___ 1142 TTT--ACGAATGGTTCAGCAGAAGAATCGGCCAAATACATCTTTCGACGA 1189
.|| ||.|.|..||.|||| |||.||.|| .|.|.|||
BPUM_1835 1138 CTTCAACCACTATTTAAGCA----AATAGGGCA---GCTTTTTT------ 1174
BSNT_02947___ 1190 ACCCTGACTGGTATAGGAT-----GTACAGCAAGATAAAAGG-------- 1226
||| ||.| || ||.|.|.||.|||.|
BPUM_1835 1175 --------TGG----GGTTATCTCGT-CATCCATATGAAATGAAGGGACG 1211
BSNT_02947___ 1227 --TGTT----------CATTCGAAAAAAGACGGAAGGGAAAGAGTACGTG 1264
||.| |||.||||..|||| ||||.||||.||.||.|
BPUM_1835 1212 TCTGATTAGATTTCAACATCCGAAGGAAGA---AAGGAAAAGTGTTCGGG 1258
BSNT_02947___ 1265 CCTGGATTA--GAACAAATGAAAAAAACGAAACCA-----TTTTTACCGC 1307
|.|||| || |.|| |||| .||||.||||.|| ||||| ||
BPUM_1835 1259 CTTGGA-TACGGCAC-AATG--TAAAAGGAAAGCAAGTCTTTTTT---GC 1301
BSNT_02947___ 1308 TCTTTATTCAGTGTATCGTTCA----AATGGAG---AGGGGTATATGAAT 1350
.||.|||.| || |||| .|||.|| .|||.|||||||||
BPUM_1835 1302 ACTATATGC------TC-TTCATCACGATGCAGCTACGGGTTATATGAAT 1344
BSNT_02947___ 1351 ATTTCTTTACCGCTTCCAT----TCAGCAGCATGACAGGTATTTTAAAAC 1396
|||.|..|.|||||||||| |||.| ||||||.||||||||..|
BPUM_1835 1345 ATTGCGCTGCCGCTTCCATATTCTCAAC----TGACAGCTATTTTAAGGC 1390
BSNT_02947___ 1397 CATATCATCATCAGGAGAAGCTGGTT----TTAACAAG--CAGG--CGGA 1438
|.|.|.||.|..| |||||.| || ||||.||| ||.| |
BPUM_1835 1391 CTTTTAATGAGAA--AGAAGAT--TTTATATTAAAAAGTACATGTCC--- 1433
BSNT_02947___ 1439 GAAAAAGCAGAGCGGGTGATGAGGGGATT-TATCTGCAAACAAGAGCGGG 1487
||||.||||..|.|||||.|| .||||| |||.||||
BPUM_1835 1434 -AAAAGGCAGTACCGGTGACGA-AGGATTGTATTTGCA------------ 1469
BSNT_02947___ 1488 AACTTGTCCGCTTCCTTTATC--------------------TGAAACCTT 1517
|.||| |.|||||| .||||.|||
BPUM_1835 1470 ------TACGC--CTTTTATCACCATGCAACTGCCAATGGAAGAAAGCTT 1511
BSNT_02947___ 1518 TCTGATA-GAAGCTGCACATGAC--AACAAA--TTAACGGCTGTTCATCA 1562
|| ||| |||.|.|.| ||| |.|||| .|.||.||.||.|||||
BPUM_1835 1512 TC--ATATGAAACCGGA---GACGGATCAAAGTCTCACAGCGGTACATCA 1556
BSNT_02947___ 1563 TATGTGGCTGTTTGGAATAAAATTTCTAACTGTTCATTACAGCATTACAC 1612
.|||..|||.||.||.||....|||.||||..||||||| .|
BPUM_1835 1557 AATGAAGCTTTTCGGTATTCCTTTTTTAACGATTCATTA---------TC 1597
BSNT_02947___ 1613 ATATTAACCAGCCTATTGAAAGAACCTAA---------------- 1641
|.|||.|| |.|||||| |.|
BPUM_1835 1598 AAATTGAC------AGTGAAAG----TCATCATGTTAGTCAATGA 1632
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