Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_06103 and BPUM_1789

See DNA alignment / Visit BSNT_06103 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:37
# Commandline: needle
#    -asequence pep-align/BSNT_06103___iolR.1.24716.seq
#    -bsequence pep-align/BPUM_1789___iolR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06103___iolR-BPUM_1789___iolR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06103___iolR-BPUM_1789___iolR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06103___iolR
# 2: BPUM_1789___iolR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 256
# Identity:     102/256 (39.8%)
# Similarity:   151/256 (59.0%)
# Gaps:           7/256 ( 2.7%)
# Score: 502.0
# 
#
#=======================================

BSNT_06103___      1 -MKLMRIQEMEEYILSHGTVSLDELCQVFNVSKNTVRRDINKLTEKGAIE     49
                      :|..|||:::||:....:.|||||...|.|||||:|||:..|.|.|..:
BPUM_1789___i      1 MIKTKRIQQIKEYVFDRESASLDELVAHFGVSKNTIRRDVQALVESGVFK     50

BSNT_06103___     50 KVYGGVTSIEKTALVPFENRTIQHQDEKTKIAHYASRFIEDHDLVFIDSG     99
                     |||||| ::..:.||.::.|..:...:|..|...|:.|:|:.|::|:|||
BPUM_1789___i     51 KVYGGV-AVNHSTLVVYQERKTRQLSKKQLIGQTAAAFVENGDMIFVDSG     99

BSNT_06103___    100 TTTKSILDTLDPAKNVTILTNSLDIINAASALKNINLIIIGNNYKRKTRS    149
                     |||..:|..|.. |.||::||::|.|..|...:|:.:...|...:|||.|
BPUM_1789___i    100 TTTLEMLPYLTD-KQVTVVTNNVDFITQAMPYENMTIFSTGGMLERKTNS    148

BSNT_06103___    150 FVGMDDPAMLDKYNINKAFMSATGTTLTHGLTNSDLLEYEIKKRISEKAK    199
                     |||......|..||:||||:::||.::.||:|||..||.:|||.:.||:.
BPUM_1789___i    149 FVGYQSVERLKAYNVNKAFIASTGLSIDHGVTNSSPLETDIKKTVVEKSA    198

BSNT_06103___    200 EVYLLADHSKFGKSTLLTYAPFDRLHCIVTSQPLDDEYTQYCNEHQIGIH    249
                     :.:||.|.|||....|.|:.....|..:||::...|:|.||..||.:...
BPUM_1789___i    199 KTFLLVDDSKFNHYALTTFCHLQDLDVVVTNKQPSDDYLQYGKEHDVQFA    248

BSNT_06103___    250 LA----    251
                     ..    
BPUM_1789___i    249 TPLSNE    254


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