Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_06103 and BPUM_1789

See Amino acid alignment / Visit BSNT_06103 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:37
# Commandline: needle
#    -asequence dna-align/BSNT_06103___iolR.1.24716.seq
#    -bsequence dna-align/BPUM_1789___iolR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06103___iolR-BPUM_1789___iolR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06103___iolR-BPUM_1789___iolR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06103___iolR
# 2: BPUM_1789___iolR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 899
# Identity:     469/899 (52.2%)
# Similarity:   469/899 (52.2%)
# Gaps:         277/899 (30.8%)
# Score: 1000.0
# 
#
#=======================================

BSNT_06103___      1 ATG----AAACTGATGCGGATTCAGGAAATGGAGGAGTA--CATTTTATC     44
                     |||    |||| .|..|||||||||.||||..|.|||||  ..|||.|.|
BPUM_1789___i      1 ATGATCAAAAC-AAAACGGATTCAGCAAATCAAAGAGTATGTGTTTGACC     49

BSNT_06103___     45 --GCATGGCACTGTTTCCTTAGATGAGC-TGTGCC------AGGTGTTCA     85
                       |.||    |||..||..||||||||| ||||.|      .||.|||  
BPUM_1789___i     50 GAGAAT----CTGCCTCACTAGATGAGCTTGTGGCGCATTTTGGCGTT--     93

BSNT_06103___     86 ATGTCTCCAAAAACACAGTCAGACGTGATATCAACAAGCTAACAGAAAAG    135
                          ||.||||||||..|..|.||.|||.|  ||||||        |..
BPUM_1789___i     94 -----TCAAAAAACACGATACGCCGAGATGT--ACAAGC--------ATT    128

BSNT_06103___    136 GGT--------GCGATTG----AAAAAGTATACGGCGGCGTAAC-----A    168
                     |||        |||  ||    ||||||||||.|||||.||..|     |
BPUM_1789___i    129 GGTGGAGTCCGGCG--TGTTCAAAAAAGTATATGGCGGAGTGGCTGTGAA    176

BSNT_06103___    169 TCTATTGAAAAAACCGCATTAGT--TCCTTTT-------GAA--AATCGC    207
                     || |||.||       |.|||||  ||  |.|       |||  |.||| 
BPUM_1789___i    177 TC-ATTCAA-------CGTTAGTGGTC--TATCAGGAGCGAAAGACTCG-    215

BSNT_06103___    208 ACCATTCAGCACCAGGATGAAAAAACAA----------AAATCGCCCATT    247
                          |||||.|    |..|||||.|||          |||     ||..
BPUM_1789___i    216 -----TCAGCTC----AGTAAAAAGCAATTGATTGGTCAAA-----CAGC    251

BSNT_06103___    248 A--TGCTTCCCGATTTATTGAAGATCACGATTTGGTCTTCATTGATTCAG    295
                     |  ||||      |||.|.||..||...|||.||.|.||..|.|||||.|
BPUM_1789___i    252 AGCTGCT------TTTGTGGAGAATGGGGATATGATATTTGTAGATTCTG    295

BSNT_06103___    296 GAACGACGACAAAGTCTATTCTTGATACGC--------TTGATCCAGCCA    337
                     |.|||||.|||         |||||.|.||        ||||  |.|.||
BPUM_1789___i    296 GTACGACAACA---------CTTGAGATGCTCCCCTATTTGA--CTGACA    334

BSNT_06103___    338 AAAATGTCACCATCTTAACCAACAGTTTAGACATTAT--------CAATG    379
                     ||.|.||.||..|..|.|||||.|.|.||||..|.||        |||||
BPUM_1789___i    335 AACAGGTGACAGTTGTGACCAATAATGTAGATTTCATCACACAGGCAATG    384

BSNT_06103___    380 CGGCGTCAGCAT-TGAAGAATATCAACTTAATCATTATC--------GGA    420
                     |        |.| |||| |||||.|   ..||| ||.||        |||
BPUM_1789___i    385 C--------CTTATGAA-AATATGA---CGATC-TTTTCTACCGGCGGGA    421

BSNT_06103___    421 AACAACTATAAGAGAAAAACCCGCTCCTTTGTCGGCATGGACGACCCGGC    470
                     ..|    .|.||||||||||....||.||.||              .|||
BPUM_1789___i    422 TGC----TTGAGAGAAAAACGAATTCTTTCGT--------------TGGC    453

BSNT_06103___    471 TAT-------------GCTTGATAAG--TACAATATCAACAAAGCCTTTA    505
                     |||             |.|||| |||  ||||||.||||.||||||||||
BPUM_1789___i    454 TATCAAAGTGTAGAGCGTTTGA-AAGCTTACAATGTCAATAAAGCCTTTA    502

BSNT_06103___    506 TGTCCGCTACCGG---AACGACGCTGACACACGGATTGACCAATTCGGAT    552
                     |..|..|.||.||   |.|||  .|||| ||||||.|.||.|||||  ||
BPUM_1789___i    503 TCGCATCAACTGGTTTATCGA--TTGAC-CACGGAGTCACGAATTC--AT    547

BSNT_06103___    553 ---CTGCTGGAGTATGAAATTAAAAAGAGGATTTCAG-------AAAAAG    592
                        || ||.||....||.||||||||||      |||       ||||||
BPUM_1789___i    548 CCCCT-CTTGAAACGGATATTAAAAAGA------CAGTGGTTGAAAAAAG    590

BSNT_06103___    593 ---CAAAAGAAGTGTATCTATTGGCTGACCATTCTAAATTCGGAAAATCA    639
                        |||||    .||.|.||||.|..||..||..||||||    .|||||
BPUM_1789___i    591 TGCCAAAA----CGTTTTTATTAGTGGATGATAGTAAATT----TAATCA    632

BSNT_06103___    640 --ACGCTTCTGACGTATGCGCCGTTTGACAGGCTGCA-----TTG----C    678
                       |||||| ||||     |.|..||||.|| ..||||     |||    |
BPUM_1789___i    633 TTACGCTT-TGAC-----CACATTTTGTCA-TTTGCAAGATCTTGATGTC    675

BSNT_06103___    679 ATTGTGACCTCT---CAGCCATTAGACGACGAGTACACGCAGTACTGCAA    725
                     .|.|||||...|   ||||||...||.|||   ||....||.||..|.||
BPUM_1789___i    676 GTCGTGACGAATAAGCAGCCAAGTGATGAC---TATCTTCAATATGGAAA    722

BSNT_06103___    726 TGAGCAT------CAAATCG----GCATTCATCTGGCCTAA--------    756
                     .||||||      ||..|.|    ||.||.|||      ||        
BPUM_1789___i    723 AGAGCATGATGTACAGTTTGCCACGCCTTTATC------AAATGAGTAG    765


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.