Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06103 and BPUM_1789
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_06103___iolR.1.24716.seq
# -bsequence dna-align/BPUM_1789___iolR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06103___iolR-BPUM_1789___iolR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06103___iolR-BPUM_1789___iolR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06103___iolR
# 2: BPUM_1789___iolR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 899
# Identity: 469/899 (52.2%)
# Similarity: 469/899 (52.2%)
# Gaps: 277/899 (30.8%)
# Score: 1000.0
#
#
#=======================================
BSNT_06103___ 1 ATG----AAACTGATGCGGATTCAGGAAATGGAGGAGTA--CATTTTATC 44
||| |||| .|..|||||||||.||||..|.||||| ..|||.|.|
BPUM_1789___i 1 ATGATCAAAAC-AAAACGGATTCAGCAAATCAAAGAGTATGTGTTTGACC 49
BSNT_06103___ 45 --GCATGGCACTGTTTCCTTAGATGAGC-TGTGCC------AGGTGTTCA 85
|.|| |||..||..||||||||| ||||.| .||.|||
BPUM_1789___i 50 GAGAAT----CTGCCTCACTAGATGAGCTTGTGGCGCATTTTGGCGTT-- 93
BSNT_06103___ 86 ATGTCTCCAAAAACACAGTCAGACGTGATATCAACAAGCTAACAGAAAAG 135
||.||||||||..|..|.||.|||.| |||||| |..
BPUM_1789___i 94 -----TCAAAAAACACGATACGCCGAGATGT--ACAAGC--------ATT 128
BSNT_06103___ 136 GGT--------GCGATTG----AAAAAGTATACGGCGGCGTAAC-----A 168
||| ||| || ||||||||||.|||||.||..| |
BPUM_1789___i 129 GGTGGAGTCCGGCG--TGTTCAAAAAAGTATATGGCGGAGTGGCTGTGAA 176
BSNT_06103___ 169 TCTATTGAAAAAACCGCATTAGT--TCCTTTT-------GAA--AATCGC 207
|| |||.|| |.||||| || |.| ||| |.|||
BPUM_1789___i 177 TC-ATTCAA-------CGTTAGTGGTC--TATCAGGAGCGAAAGACTCG- 215
BSNT_06103___ 208 ACCATTCAGCACCAGGATGAAAAAACAA----------AAATCGCCCATT 247
|||||.| |..|||||.||| ||| ||..
BPUM_1789___i 216 -----TCAGCTC----AGTAAAAAGCAATTGATTGGTCAAA-----CAGC 251
BSNT_06103___ 248 A--TGCTTCCCGATTTATTGAAGATCACGATTTGGTCTTCATTGATTCAG 295
| |||| |||.|.||..||...|||.||.|.||..|.|||||.|
BPUM_1789___i 252 AGCTGCT------TTTGTGGAGAATGGGGATATGATATTTGTAGATTCTG 295
BSNT_06103___ 296 GAACGACGACAAAGTCTATTCTTGATACGC--------TTGATCCAGCCA 337
|.|||||.||| |||||.|.|| |||| |.|.||
BPUM_1789___i 296 GTACGACAACA---------CTTGAGATGCTCCCCTATTTGA--CTGACA 334
BSNT_06103___ 338 AAAATGTCACCATCTTAACCAACAGTTTAGACATTAT--------CAATG 379
||.|.||.||..|..|.|||||.|.|.||||..|.|| |||||
BPUM_1789___i 335 AACAGGTGACAGTTGTGACCAATAATGTAGATTTCATCACACAGGCAATG 384
BSNT_06103___ 380 CGGCGTCAGCAT-TGAAGAATATCAACTTAATCATTATC--------GGA 420
| |.| |||| |||||.| ..||| ||.|| |||
BPUM_1789___i 385 C--------CTTATGAA-AATATGA---CGATC-TTTTCTACCGGCGGGA 421
BSNT_06103___ 421 AACAACTATAAGAGAAAAACCCGCTCCTTTGTCGGCATGGACGACCCGGC 470
..| .|.||||||||||....||.||.|| .|||
BPUM_1789___i 422 TGC----TTGAGAGAAAAACGAATTCTTTCGT--------------TGGC 453
BSNT_06103___ 471 TAT-------------GCTTGATAAG--TACAATATCAACAAAGCCTTTA 505
||| |.|||| ||| ||||||.||||.||||||||||
BPUM_1789___i 454 TATCAAAGTGTAGAGCGTTTGA-AAGCTTACAATGTCAATAAAGCCTTTA 502
BSNT_06103___ 506 TGTCCGCTACCGG---AACGACGCTGACACACGGATTGACCAATTCGGAT 552
|..|..|.||.|| |.||| .|||| ||||||.|.||.||||| ||
BPUM_1789___i 503 TCGCATCAACTGGTTTATCGA--TTGAC-CACGGAGTCACGAATTC--AT 547
BSNT_06103___ 553 ---CTGCTGGAGTATGAAATTAAAAAGAGGATTTCAG-------AAAAAG 592
|| ||.||....||.|||||||||| ||| ||||||
BPUM_1789___i 548 CCCCT-CTTGAAACGGATATTAAAAAGA------CAGTGGTTGAAAAAAG 590
BSNT_06103___ 593 ---CAAAAGAAGTGTATCTATTGGCTGACCATTCTAAATTCGGAAAATCA 639
||||| .||.|.||||.|..||..||..|||||| .|||||
BPUM_1789___i 591 TGCCAAAA----CGTTTTTATTAGTGGATGATAGTAAATT----TAATCA 632
BSNT_06103___ 640 --ACGCTTCTGACGTATGCGCCGTTTGACAGGCTGCA-----TTG----C 678
|||||| |||| |.|..||||.|| ..|||| ||| |
BPUM_1789___i 633 TTACGCTT-TGAC-----CACATTTTGTCA-TTTGCAAGATCTTGATGTC 675
BSNT_06103___ 679 ATTGTGACCTCT---CAGCCATTAGACGACGAGTACACGCAGTACTGCAA 725
.|.|||||...| ||||||...||.||| ||....||.||..|.||
BPUM_1789___i 676 GTCGTGACGAATAAGCAGCCAAGTGATGAC---TATCTTCAATATGGAAA 722
BSNT_06103___ 726 TGAGCAT------CAAATCG----GCATTCATCTGGCCTAA-------- 756
.|||||| ||..|.| ||.||.||| ||
BPUM_1789___i 723 AGAGCATGATGTACAGTTTGCCACGCCTTTATC------AAATGAGTAG 765
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