Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_04406 and BPUM_1754
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence pep-align/BSNT_04406___msmR.1.24716.seq
# -bsequence pep-align/BPUM_1754___msmR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_04406___msmR-BPUM_1754___msmR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04406___msmR-BPUM_1754___msmR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04406___msmR
# 2: BPUM_1754___msmR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 351
# Identity: 175/351 (49.9%)
# Similarity: 243/351 (69.2%)
# Gaps: 12/351 ( 3.4%)
# Score: 832.0
#
#
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BSNT_04406___ 1 MVRIKDIALKAKVSSATVSRILNEDESLSVAGETRQRVINIAEELGYQTV 50
|..:||||..||||.:||||:||.|::|:|:..|||.:::||::|.|..|
BPUM_1754___m 1 MTTLKDIAHNAKVSVSTVSRVLNGDQTLAVSHATRQNILDIAKKLNYTPV 50
BSNT_04406___ 51 AKRRKSRGQKQ--RAQPLIGVLSCLSPDQERQDPYFSSIRKGIEKECFEQ 98
..|:..:.::: ...|:||::...|.|:|..||:|||||||||||..:|
BPUM_1754___m 51 RARKADQAEEKSPSESPIIGIVVAQSIDEELNDPFFSSIRKGIEKEYAKQ 100
BSNT_04406___ 99 EIFITNSIHLGSF-QEHIFRELDGVIVIGRVHDEAVKHISGRLEHAVFIN 147
.:...::..|.|. |..:.:::||:|||||:..:.|:.::.|:||.||||
BPUM_1754___m 101 GLSTLHTFRLRSMDQGAMLKDIDGLIVIGRISPDTVEKMTNRMEHIVFIN 150
BSNT_04406___ 148 HSPDPKAYDSIGIDFKSASRQAIDHLFDLGYKRLGYIGGQEKEHTLKDGQ 197
|..|...||.:.:||..|:.:||.||..|||..||||||:|:||.. :|.
BPUM_1754___m 151 HYADEDLYDCVHVDFVRAADRAIRHLQSLGYTHLGYIGGKEREHYF-EGN 199
BSNT_04406___ 198 SIRRTIEDKRLTAFL----ESAAPQPEHVLIGEYSMREGYRLMKKAIDQG 243
:: |||:|.|.|: |:.....:.:.||||||:|||.||::||.:|
BPUM_1754___m 200 AV---IEDERQTTFMKRMQEAGGLHLDDIHIGEYSMQEGYTLMQQAIKKG 246
BSNT_04406___ 244 HLPEAFFIASDSMAIGALKALQEAGLQVPRDTAIVSFNGIEEAEFASTPL 293
:||:||||.||||||||::||.||||:||.|.:||.||.||.|.|:|.||
BPUM_1754___m 247 NLPQAFFIGSDSMAIGAMRALNEAGLRVPSDVSIVGFNDIEAASFSSPPL 296
BSNT_04406___ 294 TTVKVYTEEMGRTGVKLLLDRLNGRTLPHQVTLPTRLIVRQSCGCTAKEV 343
|||||||||||..|:||||:|:|||.||.:|.:||:||.|.|. |...|.
BPUM_1754___m 297 TTVKVYTEEMGEVGLKLLLERINGRKLPLKVVVPTKLIERGST-CLVHER 345
BSNT_04406___ 344 T 344
.
BPUM_1754___m 346 G 346
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