Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04406 and BPUM_1754
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_04406___msmR.1.24716.seq
# -bsequence dna-align/BPUM_1754___msmR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04406___msmR-BPUM_1754___msmR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04406___msmR-BPUM_1754___msmR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04406___msmR
# 2: BPUM_1754___msmR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1159
# Identity: 663/1159 (57.2%)
# Similarity: 663/1159 (57.2%)
# Gaps: 242/1159 (20.9%)
# Score: 1591.5
#
#
#=======================================
BSNT_04406___ 1 ATGGTTCGTA------TTAAAGATATCGC-CTTGAAAGCTAAAGTTTCCA 43
||| | |.||||||||.|| |.| ||.||.|||||.|||.
BPUM_1754___m 1 ATG------ACCACACTCAAAGATATTGCTCAT-AATGCAAAAGTGTCCG 43
BSNT_04406___ 44 GCGCAACTGTGTCCAGAATTTTAAATGAAGATGAGTCGCTTTCTGTTGCG 93
...|.|||||.|||.|..|.|||||||..|||.|..|.|||.|.|||.|.
BPUM_1754___m 44 TTTCTACTGTATCCCGTGTGTTAAATGGCGATCAAACCCTTGCCGTTTCT 93
BSNT_04406___ 94 GGCGAAACGAGACAAAGAGTCATCAACATCGCTGAAGAGCTTGGTTATCA 143
..||.|||.|||||||...||.||.||||.|| .||||..|| |
BPUM_1754___m 94 CACGCAACAAGACAAAACATCCTCGACATTGC-AAAGAAGTT-------A 135
BSNT_04406___ 144 AACCGTTGCC-------------AAACGCCGAAAATCCCGC--GGGCAAA 178
|||..|..|| |||.|||| |||..|| .||.|||
BPUM_1754___m 136 AACTATACCCCAGTGAGAGCAAGAAAAGCCG---ATCAAGCAGAGGAAAA 182
BSNT_04406___ 179 AA---CAGCGGGCTCAGCCGCTGATCGGTGT-GCTG-AGCTGTCTGTCCC 223
|| ||.|.|..|| .||..|.||||||.| |.|| .|| ||..|||.
BPUM_1754___m 183 AAGCCCATCTGAATC-CCCAATCATCGGTATCGTTGTCGC--TCAATCCA 229
BSNT_04406___ 224 CTGATCAGGAAAGGCAGGA-CCCTTATTTTTCTTCCATTCGGAAAGGGAT 272
.|||..|.|||....|.|| ||||| |||.||.||.|||||.|||||.||
BPUM_1754___m 230 TTGACGAAGAATTAAATGATCCCTT-TTTCTCATCGATTCGAAAAGGAAT 278
BSNT_04406___ 273 TGAAAAGGAATGCTTTG---AACA--GGAAATTTTCATTACAAATTCGAT 317
||||||.||| |.|| |||| || |..|.||...||.||
BPUM_1754___m 279 TGAAAAAGAA---TATGCCAAACAAGGG-------CTGTCCACCCTCCAT 318
BSNT_04406___ 318 TCATCTCGGCTCCTTTCAGGAA-CAT-------------AT-CTTTCGGG 352
.|.|.|||.|| |.||| ||| || ||...||.
BPUM_1754___m 319 ACCTTTCGCCT------AAGAAGCATGGATCAAGGGGCGATGCTAAAGGA 362
BSNT_04406___ 353 AATTGGATGGTGTCATTGTCATCGGCCG----TGTTCATGATGAAGCGGT 398
.||| ||||||.|.||.|||||.||||| .||.|| ||..||||
BPUM_1754___m 363 TATT-GATGGTTTGATCGTCATTGGCCGAATCAGTCCA----GATACGGT 407
BSNT_04406___ 399 TAAGCATAT----AAGCGGAAGGCTTGAGCATGCCGTATTTATCAATCAT 444
|.|..|.|| ||.||.| |.||.||....||.||||||||||||
BPUM_1754___m 408 TGAAAAAATGACAAATCGAA----TGGAACACATTGTTTTTATCAATCAT 453
BSNT_04406___ 445 TCACCAGATCCGAAAGCATACGATT----CGATTG-GAA----TCGATTT 485
| ||.||.|.| |.|||| .||||| |.| |.|||||
BPUM_1754___m 454 T------ATGCGGATG---AGGATTTGTATGATTGTGTACATGTTGATTT 494
BSNT_04406___ 486 T---AAATCGGCTTCACGCCAAGCGATTGATCACCTTTT----TGACTTA 528
| |.|.||| ||...|.|||.|| ||.||.||| |..|||
BPUM_1754___m 495 TGTCAGAGCGG---CAGATCGAGCCAT---TCGCCATTTGCAATCGCTT- 537
BSNT_04406___ 529 GGCTACAAACGGTTAGGCTACATTGGCGGACAAGAAAAG-GAGCATACGC 577
|||||.|.||..||||||||.|||||.||| |||.|..| ||||||
BPUM_1754___m 538 GGCTATACACATTTAGGCTATATTGGTGGA-AAGGAGCGAGAGCAT---- 582
BSNT_04406___ 578 T-----GAAGGACGGCCAAAGC----ATTCGCAGAACGATTGAAGACAAA 618
| ||||| .||.|| ||| .||.|||| ||||||||
BPUM_1754___m 583 TATTTCGAAGG-----GAATGCTGTGATT--GAGGACGA---AAGACAAA 622
BSNT_04406___ 619 CGCCTGACCGCTTTTTTGGAGTCAGCCGCCCCCCAGCCTG-----AGCAT 663
|| .|.|||.||.| .||..|| ||||.
BPUM_1754___m 623 CG-------ACGTTTATGAA-------------AAGAATGCAAGAAGCAG 652
BSNT_04406___ 664 GTG--------CTG------------ATCGGAGAATACAGCATGCGTGAG 693
||| ||| |||||.||||||..|||||..||.
BPUM_1754___m 653 GTGGTCTTCATCTGGATGACATCCATATCGGGGAATACTCCATGCAAGAA 702
BSNT_04406___ 694 GGCTAT-CGCCTGATGAAGAAAGCAATTGATCAAGGCCATCTGCCGGAAG 742
|||||| || ||.|||.||.|.||.|||.|..|.||..|.|||||..|||
BPUM_1754___m 703 GGCTATACG-CTCATGCAGCAGGCCATTAAAAAGGGGAACCTGCCACAAG 751
BSNT_04406___ 743 CATTCTTTATTGCCAGCGATTCTATGGCGATCGGCGCATTAAAAGCGCTG 792
|.||.|||||.|..||.|||||.|||||||||||.|||.|....|||||.
BPUM_1754___m 752 CCTTTTTTATCGGAAGTGATTCAATGGCGATCGGTGCAATGCGTGCGCTC 801
BSNT_04406___ 793 CAGGAAGCCGGACTGCAAGTGCC----GCGGGATACTGCAATCGTCAGCT 838
.|.||||||||.||.|..||.|| |..|.|| |.|||||..|.|
BPUM_1754___m 802 AACGAAGCCGGTCTACGTGTACCTTCAGACGTAT----CCATCGTTGGGT 847
BSNT_04406___ 839 TTAACGGCATTGAGGAAGCTGAATTTGCCAGCACGCCTTTAACGACGGTG 888
||||.|.||||||.|..|||..||||.|.||..||||..|.||.||.||.
BPUM_1754___m 848 TTAATGACATTGAAGCGGCTTCATTTTCAAGTCCGCCACTTACAACCGTC 897
BSNT_04406___ 889 AAGGTATACACAGAGGAAATGGGCCGGACAGGCG---TAAAACTGCTGCT 935
||.|||||.|||||.|||||||| ||| ||.|| |.||.||..||||
BPUM_1754___m 898 AAAGTATATACAGAAGAAATGGG--GGA-AGTCGGTCTGAAGCTTTTGCT 944
BSNT_04406___ 936 TGACCGTCTCAATGGCCGTACGCTTCCCCACCAAGTCACCCTGCCAACAA 985
|||..|..|.||.|||.|.|.||||||.|...|||||..|.|||||||||
BPUM_1754___m 945 TGAGAGAATAAACGGCAGAAAGCTTCCTCTAAAAGTCGTCGTGCCAACAA 994
BSNT_04406___ 986 GATTAATCGTAAGACAAA----GCTGCGGAT-----GTACAGCAAAGGAG 1026
.|.|.|||| || ||.||..|| ||.||..|||||.|
BPUM_1754___m 995 AACTCATCG-------AACGGGGCAGCACATGTCTCGTCCATGAAAGGGG 1037
BSNT_04406___ 1027 GTGACATAA 1035
||||
BPUM_1754___m 1038 GTGA----- 1041
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