Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04408 and BPUM_1752

See DNA alignment / Visit BSNT_04408 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:57
# Commandline: needle
#    -asequence pep-align/BSNT_04408___amyD.1.24716.seq
#    -bsequence pep-align/BPUM_1752___amyD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04408___amyD-BPUM_1752___amyD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04408___amyD-BPUM_1752___amyD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04408___amyD
# 2: BPUM_1752___amyD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 311
# Identity:     196/311 (63.0%)
# Similarity:   243/311 (78.1%)
# Gaps:          25/311 ( 8.0%)
# Score: 1065.0
# 
#
#=======================================

BSNT_04408___      1 MSEIAR--------DVHVKQVKPKKQSSLWWMYIPALLSVLVFMIYPFVK     42
                     |::|.:        .:..:::|..:.|||||||:||:|.|..|:||||:.
BPUM_1752___a      1 MNDITKAEQPAAFSPLPKQKMKKNQNSSLWWMYLPAVLVVSTFIIYPFLN     50

BSNT_04408___     43 GTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFF     92
                     |..::|||||||||.|:|:|..||:||..||.||.::|||||||:|||..
BPUM_1752___a     51 GIQLSFTNWNGFSQTYEWIGLDQYKRLVQDPTTWLVVKNTLLYGIGSTIL    100

BSNT_04408___     93 QNVVGLLYALLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGG    142
                     ||::||.||||||||:|.:|:|||::||||||||:.|||||||.|:|.||
BPUM_1752___a    101 QNIIGLGYALLLNQSLKMRAITRTVIYLPVMISPIAMGYIWYFVFAYQGG    150

BSNT_04408___    143 ALNDLLGVFGISPINALASP----------------SIAMVVYLAGLQSI    176
                     ||||::.:||...:|||.:|                .|||::||||||||
BPUM_1752___a    151 ALNDVVTLFGFDQMNALGNPQLNTWIIMLVNTYQFVGIAMIIYLAGLQSI    200

BSNT_04408___    177 PKDYYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFDVII    226
                     |||||||||:|||...|||..||||||:||||||:|:|:||||||||||:
BPUM_1752___a    201 PKDYYEAAQLDGASSLQQFSRITLPLLLPSITINVVLNVIGGLKLFDVIV    250

BSNT_04408___    227 ALTAGGPGNASQSMSTFMYDLYFKRQDAGYAATQGIFMAFVILIISFCAL    276
                     |||.||||::|||||||||||||||||||||||||:|||.:||:||..||
BPUM_1752___a    251 ALTGGGPGDSSQSMSTFMYDLYFKRQDAGYAATQGVFMAVIILVISVTAL    300

BSNT_04408___    277 AYFKRKETEMS    287
                     .||||||||| 
BPUM_1752___a    301 MYFKRKETEM-    310


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