Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04408 and BPUM_1752

See Amino acid alignment / Visit BSNT_04408 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:57
# Commandline: needle
#    -asequence dna-align/BSNT_04408___amyD.1.24716.seq
#    -bsequence dna-align/BPUM_1752___amyD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04408___amyD-BPUM_1752___amyD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04408___amyD-BPUM_1752___amyD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04408___amyD
# 2: BPUM_1752___amyD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 978
# Identity:     604/978 (61.8%)
# Similarity:   604/978 (61.8%)
# Gaps:         159/978 (16.3%)
# Score: 1835.0
# 
#
#=======================================

BSNT_04408___      1 ATGAGTGAGATCGCAAGGGACGTTCATGTGAAACAGGTTA---AGCC---     44
                     ||||.|||.|||.|||              ||.|||...|   ||||   
BPUM_1752___a      1 ATGAATGACATCACAA--------------AAGCAGAGCAGCCAGCCGCA     36

BSNT_04408___     45 -----------------------------AAAAAAGCAG---TCCTCACT     62
                                                  ||||||.|||   ||.||.||
BPUM_1752___a     37 TTCTCCCCTTTACCAAAGCAGAAAATGAAAAAAAACCAGAATTCATCCCT     86

BSNT_04408___     63 TTGGTGGATGTACATTCCTGCTTTGCTC----TCCGTTCTGGTCTTTATG    108
                     |||||||||||||.|.||.|||.|.|||    ||.||.|    ||||||.
BPUM_1752___a     87 TTGGTGGATGTACTTGCCAGCTGTTCTCGTTGTCAGTAC----CTTTATC    132

BSNT_04408___    109 ATTTATCCGTTTGTGAAAGGCACATT--GATTACCTTTACAAACTGGAAC    156
                     ||||||||.|||.||||.||  ||||  |.|..|.|||||.||.|||||.
BPUM_1752___a    133 ATTTATCCTTTTTTGAACGG--CATTCAGCTATCTTTTACGAATTGGAAT    180

BSNT_04408___    157 GGCTTTTCACAAGTCTACCAATGGGTTGGATTCGCGCAATATGAAAGGCT    206
                     ||.|||||.|||...||..|.|||.|||||.|.|..||||||.|..|.||
BPUM_1752___a    181 GGGTTTTCGCAAACTTATGAGTGGATTGGACTTGATCAATATAAGCGTCT    230

BSNT_04408___    207 GTTTTCTGATCC--TGACACTTGGCATATCTTAAAAAACACGCTGCTTTA    254
                     |.||...||.||  .||||  ||||.|.|..|.|||||.|||||.||.||
BPUM_1752___a    231 GGTTCAGGACCCAACGACA--TGGCTTGTTGTTAAAAATACGCTTCTATA    278

BSNT_04408___    255 CGGGCTTGGCAGCACTTTTTTTCAAAATGTGGTCGGGCTTCTATACGCTC    304
                     |||..|.||.|||||..|.||.||||||.|..||||.|||...||.||||
BPUM_1752___a    279 CGGCATCGGGAGCACCATCTTACAAAATATCATCGGACTTGGTTATGCTC    328

BSNT_04408___    305 TGCTCTTAAATCAAAGCATTAAA-ACGAAAGCGGTAACAAGAACAATTGT    353
                     |..|.|||||||||||| ||||| |.||.||||.|.|||||||||.|..|
BPUM_1752___a    329 TTTTATTAAATCAAAGC-TTAAAGATGAGAGCGATCACAAGAACAGTCAT    377

BSNT_04408___    354 GTATTTGCCGGTGATGATCAGCCCGCTCATT---ATGGGCTACATTTGGT    400
                     .|||||.||.||.|||||.||.|||   |||   ||||||||.|||||||
BPUM_1752___a    378 CTATTTACCTGTCATGATTAGTCCG---ATTGCGATGGGCTATATTTGGT    424

BSNT_04408___    401 ACTTTTTCTTCTCCTATGACGGAGGCGCGCTCAATGATTTGCTCGGGGTC    450
                     |.||..|.||..|.||..|.||.||.||..|.||.|||.|..|...|.|.
BPUM_1752___a    425 ATTTCGTGTTTGCTTACCAAGGCGGTGCCTTAAACGATGTAGTGACGCTT    474

BSNT_04408___    451 TTCGG----CATCAGCCCTATTAATGCGCTCGCCAGTCC-----------    485
                     ||.||    .||||    .||.||||||||.|.||.|||           
BPUM_1752___a    475 TTTGGATTTGATCA----AATGAATGCGCTTGGCAATCCGCAATTAAACA    520

BSNT_04408___    486 --------------CTCG-----------------------ATCGCTATG    498
                                   ||||                       ||.||.|||
BPUM_1752___a    521 CATGGATCATTATGCTCGTCAACACCTATCAATTCGTCGGTATTGCGATG    570

BSNT_04408___    499 GTTGTCTACTTAGCCGGTCTGCAAAGCATTCCGAAAGACTACTATGAAGC    548
                     .|..|.||.|||||.||.||||||||||||||.||.||.||.||||||||
BPUM_1752___a    571 ATCATTTATTTAGCAGGACTGCAAAGCATTCCTAAGGATTATTATGAAGC    620

BSNT_04408___    549 GGCGCAAATGGATGGCGCGAAACAAG--GCCAGCAGTTTTTTACCATCAC    596
                     .||.|||.|.||.|||||  |.|.||  .||||||.|||..|...||.||
BPUM_1752___a    621 CGCACAATTAGACGGCGC--ATCCAGCCTCCAGCAATTTAGTCGAATTAC    668

BSNT_04408___    597 GCTGCCGCTGTTAATGCCCTCCATTACCATTAATATGGTCATCAACATTA    646
                     ..||||.||..|..|.||.||.||.|||||||||.|.||..|.||..|.|
BPUM_1752___a    669 ATTGCCTCTCCTTCTACCGTCTATCACCATTAATGTTGTGCTAAATGTCA    718

BSNT_04408___    647 TCGGAGGCTTAAAGCTGTTTGACGTCATCATTGCACTCACCGCTGGCGGC    696
                     |.||.||..|.|||||.|||||.||.||..|.||.||.||.|..|||||.
BPUM_1752___a    719 TTGGCGGGCTCAAGCTCTTTGATGTGATTGTGGCGCTTACTGGCGGCGGA    768

BSNT_04408___    697 CCCGGAAATGCGTCACAATCCATGTCCACGTTTATGTATGATTTGTATTT    746
                     ||.|||.||.|.||||||||.|||||.||.||||||||||||.|||||||
BPUM_1752___a    769 CCGGGAGATTCCTCACAATCGATGTCGACCTTTATGTATGATCTGTATTT    818

BSNT_04408___    747 CAAACGGCAGGATGCCGGCTATGCCGCAACGCAAGGCATATTTATGG---    793
                     ||||||.||.|||||.||.|||||.|||||.|||||..|.||.||||   
BPUM_1752___a    819 CAAACGTCAAGATGCAGGATATGCAGCAACACAAGGGGTCTTCATGGCGG    868

BSNT_04408___    794 ----CAT--TTGTCATT-TTGATCATCAGCTTTTGCGCGCTTGCGTACTT    836
                         |||  |||||||| .|| ||| ||        |||||...|||.||
BPUM_1752___a    869 TCATCATCCTTGTCATTAGTG-TCA-CA--------GCGCTGATGTATTT    908

BSNT_04408___    837 TAAAAGAAAGGAGACGGAAATGTCATGA    864
                     .|||.||||||||||.||.||||.|   
BPUM_1752___a    909 CAAACGAAAGGAGACCGAGATGTGA---    933


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04408 and BPUM_1752

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
