Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03936 and BPUM_1680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:25
# Commandline: needle
# -asequence pep-align/BSNT_03936.1.24716.seq
# -bsequence pep-align/BPUM_1680___yrhJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03936-BPUM_1680___yrhJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03936-BPUM_1680___yrhJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03936
# 2: BPUM_1680___yrhJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1054
# Identity: 455/1054 (43.2%)
# Similarity: 564/1054 (53.5%)
# Gaps: 306/1054 (29.0%)
# Score: 2380.0
#
#
#=======================================
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 1 MQQTSIIPKPKTYGPFKNIPHIKKGELSQTFWRLADELGPIFQFEFSKAT 50
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 51 SIFVSSHELAKEVFDESRFDKFIGSSLNKVRTFSGDGLFTSWTEEPNWRK 100
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 101 AHHILMPAFSQQAMKGYHEMMLDIATQLVQKWQRTGRDEEIEVAEDMTKL 150
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 151 TLDTIGLCGFDFRFNSFYKENQHPFIESMLNGLNEAMEQASRLPVADKLM 200
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 201 IKRRKKFEENVDFMKTLVDDIIQERRKQDKTGNDLLSLMLHAKDPETGER 250
BSNT_03936 1 ------------------------------------------------ML 2
:|
BPUM_1680___y 251 LSDENIRYQIITFLIAGHETTSGLLSFAIYFLLKNPEKLKKAVQEADDVL 300
BSNT_03936 3 TDDTPEYKQIQQLKYTRMVLNETLRLYPTAPAFSLYAKEDTVLGGEYPIS 52
..:.|.:||:|:|.||||||||.|||:||||.|||||||||::||:|.|.
BPUM_1680___y 301 QGELPTFKQVQKLTYTRMVLNEALRLWPTAPTFSLYAKEDTIIGGKYSIK 350
BSNT_03936 53 KGQPVTVLIPKLHRDQNAWGPDAEDFRPERFEDPSSIPHHAYKPFGNGQR 102
|.|.|:||:|||||||..||.|||:|:||||..|..||.|||||||||||
BPUM_1680___y 351 KNQSVSVLLPKLHRDQAVWGGDAEEFKPERFLHPEKIPQHAYKPFGNGQR 400
BSNT_03936 103 ACIGMQFALQEATMVLGLVLKHFELINHTGYELKIKEALTIKPDDFKITV 152
|||||||||.||||||.:||.:.|||:||.|||.:||:|||||:||||.|
BPUM_1680___y 401 ACIGMQFALHEATMVLAMVLHNMELIDHTSYELNLKESLTIKPNDFKIKV 450
BSNT_03936 153 KPRKTAAINVQRKEQAEIKAETKPKETKPK-HGTPLLVLYGSNLGTAEGI 201
:|||........|| |.|..|..:|:|.| ||||||||||||||||:.|
BPUM_1680___y 451 RPRKQQLFMAPPKE--ETKKSTTIEESKVKSHGTPLLVLYGSNLGTAQQI 498
BSNT_03936 202 ADELASQGRQMGFTAETAPLDDYIGKLPEEGAVVIVTASYNGSPPDNAAG 251
|:|||..|:..||...|||||||..:||::|||:||||||||.|||:|..
BPUM_1680___y 499 ANELAEDGKAKGFDMTTAPLDDYARQLPDKGAVLIVTASYNGHPPDHAKT 548
BSNT_03936 252 FVEWLKELEEGQLKGVSYAVFGCGNRSWASTYQRIPRLIDDMMKAKGASR 301
||:|:.:.:|..|..|::||||||:|:|||||||||||||:.:::|||.|
BPUM_1680___y 549 FVDWVTQDKEKDLTNVTFAVFGCGDRNWASTYQRIPRLIDEALESKGAKR 598
BSNT_03936 302 LTEIGEGDAADDFESHRESWENRFWKETMDAFDINEIAQKEDRPSLSIAF 351
:.::|||||..|.:..:|:::...:::....|.:....:.::.|.||:|:
BPUM_1680___y 599 VADLGEGDAGGDMDEDKETFQKIVFEQLAKEFQLTFQEKGKETPKLSVAY 648
BSNT_03936 352 LSEATETPVAKAYGAFEGVVLENRELQTADSTRSTCHIELEIPAGKTYKE 401
.:|..|.||||.||||..|||:|.|||:..|.|.|.||||.:|.||.|||
BPUM_1680___y 649 TNELVERPVAKTYGAFSAVVLKNEELQSQKSERKTRHIELRLPEGKKYKE 698
BSNT_03936 402 GDHIGILPKNSRELVQRVLSRFGLQSNHVIKVSGSAHMAHLPMDRPIKVA 451
||||||:|||...|||||:.||.|.....||:|......|||:.:||::.
BPUM_1680___y 699 GDHIGIVPKNRDVLVQRVIDRFNLDPKQHIKLSSEKEANHLPLGQPIQIR 748
BSNT_03936 452 DLLSSYVELQEPASRLQLRELASYTVCPPHQKELEQLVSDDGIYKEQVLA 501
:||:|:|||||||:|.||||||||||||||:.||||:..: .|:|.:|.
BPUM_1680___y 749 ELLASHVELQEPATRTQLRELASYTVCPPHRVELEQMAGE--AYQEAILK 796
BSNT_03936 502 KRLTMLDFLEDYPACEMPFERFLALLPSLKPRYYSISSSPKVHANIVSMT 551
||:||||.|:.|.||||||..||||||.|||||||||||||:....||:|
BPUM_1680___y 797 KRVTMLDLLDQYEACEMPFAHFLALLPGLKPRYYSISSSPKIDEKRVSIT 846
BSNT_03936 552 VGVVKASAWSGRGEYRGVASNYLAELNTGDAAACFIRTPQSGFQMPDEPE 601
|.|||..||||||||.|||||||.:|..|:..|||:...|:|||:|...|
BPUM_1680___y 847 VAVVKGKAWSGRGEYAGVASNYLCDLQKGEEVACFLHEAQAGFQLPPSSE 896
BSNT_03936 602 TPMIMVGPGTGIAPFRGFIQARSVLKKEGSTLGEALLYFGCRRPDHDDLY 651
|||||:||||||||||||:|||.|.:|||..||||.||||||.|..||||
BPUM_1680___y 897 TPMIMIGPGTGIAPFRGFVQAREVWQKEGKRLGEAHLYFGCRHPHEDDLY 946
BSNT_03936 652 REELDQAEQEGLVTIRRCYSRVKNEPKEYVQHLLKQDTQKLMTLIEKGAH 701
.||:..|.|:|:|.|||.|||.|:: |.|||||||:|...|:.|:::||:
BPUM_1680___y 947 FEEMQLAAQKGVVHIRRAYSRHKDQ-KVYVQHLLKEDGGMLIKLLDEGAY 995
BSNT_03936 702 IYVCGDGSQMAPDVEKTLRLAYEAEKGASQEESAEWLQKLQDQRRYVKDV 751
:||||||..||||||.||...|:.||..|:|::..||..|.:..||||||
BPUM_1680___y 996 LYVCGDGKVMAPDVESTLIDLYQHEKQCSKEDAENWLTTLANNNRYVKDV 1045
BSNT_03936 752 WTGM 755
|:
BPUM_1680___y 1046 WS-- 1047
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