Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03936 and BPUM_1680
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:25
# Commandline: needle
# -asequence dna-align/BSNT_03936.1.24716.seq
# -bsequence dna-align/BPUM_1680___yrhJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03936-BPUM_1680___yrhJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03936-BPUM_1680___yrhJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03936
# 2: BPUM_1680___yrhJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3350
# Identity: 1542/3350 (46.0%)
# Similarity: 1542/3350 (46.0%)
# Gaps: 1288/3350 (38.4%)
# Score: 4334.0
#
#
#=======================================
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 1 ATGCAACAAACATCAATCATTCCAAAACCAAAAACATACGGACCTTTTAA 50
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 51 AAATATTCCTCATATCAAAAAGGGGGAGCTTTCTCAAACCTTTTGGCGGC 100
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 101 TGGCAGACGAATTAGGACCGATCTTTCAATTTGAATTTTCAAAAGCAACA 150
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 151 AGTATTTTTGTTTCCAGCCATGAACTTGCCAAAGAAGTATTTGATGAGAG 200
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 201 CCGTTTTGATAAATTCATCGGGAGCAGTCTGAATAAAGTAAGAACATTTT 250
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 251 CAGGGGATGGGTTATTTACAAGCTGGACAGAAGAACCGAACTGGAGAAAG 300
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 301 GCTCATCACATCTTGATGCCGGCGTTTAGTCAGCAGGCTATGAAGGGGTA 350
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 351 CCATGAGATGATGCTCGATATTGCCACACAGCTTGTACAAAAATGGCAAA 400
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 401 GAACAGGCCGTGATGAAGAAATTGAAGTAGCAGAGGATATGACAAAGCTC 450
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 451 ACTTTAGATACGATTGGACTTTGTGGTTTTGACTTCAGGTTTAACAGCTT 500
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 501 TTATAAAGAAAATCAGCATCCTTTCATCGAAAGCATGCTGAACGGGTTAA 550
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 551 ACGAAGCGATGGAACAAGCAAGTAGGTTGCCGGTTGCAGATAAATTAATG 600
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 601 ATCAAAAGAAGAAAAAAATTTGAAGAAAATGTAGATTTTATGAAGACATT 650
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 651 AGTAGACGACATTATTCAAGAACGGAGAAAACAAGATAAAACGGGCAATG 700
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 701 ATTTACTGTCCCTTATGCTTCATGCAAAGGACCCTGAAACAGGTGAGCGC 750
BSNT_03936 0 -------------------------------------------------- 0
BPUM_1680___y 751 CTGTCAGATGAAAATATTCGCTATCAAATCATTACCTTCTTAATAGCTGG 800
BSNT_03936 1 -------------------------------------------GTGTTAA 7
.|.||||
BPUM_1680___y 801 GCACGAAACAACAAGCGGGCTGTTATCCTTTGCGATTTATTTCTTATTAA 850
BSNT_03936 8 CGGATGACACGCCTGAATA--TAAACAAATCC------------------ 37
|.|..||.|||.| ||||.|||.||
BPUM_1680___y 851 ------AAAATCCAGAAAAATTAAAGAAAGCCGTCCAAGAAGCAGATGAT 894
BSNT_03936 38 ----------------------------AGCAGCT-CAAA--------TA 50
|||||.| |||| ||
BPUM_1680___y 895 GTGCTGCAAGGCGAACTGCCAACATTTAAGCAGGTACAAAAACTAACTTA 944
BSNT_03936 51 CACTCGGATGGTTTTAAATGAAACCCTCAGACTGTATCCAACAGCTCCGG 100
||||||.|||||||||||||||.|||||.|.||.|..||||||||.||..
BPUM_1680___y 945 CACTCGTATGGTTTTAAATGAAGCCCTCCGCCTCTGGCCAACAGCGCCTA 994
BSNT_03936 101 CTTTTTCTCTATATGCGAAGGAGGATACTGTTCTAGGCGGGGAATATCCG 150
|.||.|||||.||||||||.|||||.||..|..|.||.|||.||||..||
BPUM_1680___y 995 CGTTCTCTCTTTATGCGAAAGAGGACACAATCATCGGAGGGAAATACTCG 1044
BSNT_03936 151 ATCAGCAAAGGGCAGCCA----GTCACTGTTTTAATTCCAAAACTGCACC 196
||.| |||.| |.||| ||..|.|||.||.|.||.|||.|.||||
BPUM_1680___y 1045 ATTA--AAAAG--AACCAAAGTGTTTCCGTTCTACTCCCTAAATTACACC 1090
BSNT_03936 197 GGGACCAAAACGCT-TGGGGGCCGGATGCGGAAGATTTCCGTCCGGAACG 245
|.||.| ||.||.| |||||...||||||||||||.||....||.||.||
BPUM_1680___y 1091 GTGATC-AAGCGGTATGGGGAGGGGATGCGGAAGAATTTAAACCAGAGCG 1139
BSNT_03936 246 GTTTGAGGATCCTTCAAGTATCCCTCACCATGCGTATAAGCCGTTTGGAA 295
.|||..|.|.|||..||..|||||.||.|||||.||.|||||.|||||.|
BPUM_1680___y 1140 TTTTCTGCACCCTGAAAAGATCCCGCAGCATGCCTACAAGCCTTTTGGGA 1189
BSNT_03936 296 ACGGACAGCGCGCTTGTATTGGCATGCAGTTTGCTCTTCAAGAAGCGACA 345
|.||||||||.||.||||||||.|||||.|||||||||||.|||||.||.
BPUM_1680___y 1190 ATGGACAGCGTGCATGTATTGGTATGCAATTTGCTCTTCATGAAGCCACT 1239
BSNT_03936 346 ATGGTTCT-----CGGTCTTGTATTAAAGCATTTTGAATTGATTAACCAT 390
|||||.|| .|||||||.|..|.| |.|||||||||.|.||.
BPUM_1680___y 1240 ATGGTACTGGCAATGGTCTTGCACAACA-----TGGAATTGATTGATCAC 1284
BSNT_03936 391 ACTGGCTACGAACTAAAAATCAAAGAAGCATTAACGATCAAGCCGGATGA 440
||....||||||||.||..|.||||||.|.||||||||.|||||..|.||
BPUM_1680___y 1285 ACATCATACGAACTTAATTTAAAAGAATCTTTAACGATTAAGCCAAACGA 1334
BSNT_03936 441 TTTTAAAATTACTGTGAAACCGCGGAAAACAGCGGCAA---TCAATGTAC 487
|||||||||.|..|||...||..||| |||.|||| |..|||
BPUM_1680___y 1335 TTTTAAAATCAAAGTGCGGCCAAGGA----AGCAGCAACTCTTTATG--- 1377
BSNT_03936 488 AGAGAAAAGAACAGGCAGAAATCAAAGCAGAAACAAAGCCAAAAGAA--A 535
|.||.|.| .||||.||||||||| .|||||.| |
BPUM_1680___y 1378 --------GCACCGCC------GAAAGAAGAAACAAA--AAAAAGCACCA 1411
BSNT_03936 536 CCA------AACCTAAA---------CACGGCACACCTTTACTCGTTCTT 570
||| |..||||| ||.||.|||||..||||.|||.|.
BPUM_1680___y 1412 CCATTGAAGAGTCTAAAGTGAAGAGTCATGGTACACCACTACTTGTTTTA 1461
BSNT_03936 571 TACGGTTCAAACCTTGGGACAGCTGAGGGAATAGCCGATGAATTGGCTTC 620
||.||.|||||.|||||.|||||..||..|||.||..|.||||||| |
BPUM_1680___y 1462 TATGGATCAAATCTTGGTACAGCGCAGCAAATCGCAAACGAATTGG---C 1508
BSNT_03936 621 TCAAGGCCG----CCAGATGGGCTTTACAGCTGA-AACGGCTCCGCTTGA 665
|.|||.|.| .||.|.||..||.|.| ||| .|||||||||||.||
BPUM_1680___y 1509 TGAAGACGGAAAAGCAAAAGGATTTGATA--TGACCACGGCTCCGCTCGA 1556
BSNT_03936 666 TGATTATATCG-GCAAGCTCCCTGAAGAAGGG-GCAGTCGTCATTGTAAC 713
|||.||| .|| ||.|..|.||.| |.||||| |||||..|.||.||.||
BPUM_1680___y 1557 TGACTAT-GCGCGCCAATTACCAG-ATAAGGGTGCAGTTCTTATCGTGAC 1604
BSNT_03936 714 GGCTTCTTATAATGGGTCGCCGCCTGATAATGCTGCCGG-----CTTTGT 758
.|||||.||.|||||....||||||||..|||| | .|||||
BPUM_1680___y 1605 CGCTTCATACAATGGACATCCGCCTGACCATGC-----GAAAACATTTGT 1649
BSNT_03936 759 AGAGTGGCT---------GAAAGAGCTTGAGGAAGGCCAATT---GAAAG 796
.||.|||.| .||||| ||||| ||| .|||.
BPUM_1680___y 1650 GGATTGGGTCACGCAGGATAAAGA-------GAAGG---ATTTAACAAAC 1689
BSNT_03936 797 GTGTTTCCTATGCGGTATTCGGCTGCGGGAACCGGAGCTGGGCCAGCACG 846
||| .|.|.|||.||.||.||.||||||.|.||.|..|||||.||.||.
BPUM_1680___y 1690 GTG--ACATTTGCTGTGTTTGGATGCGGGGATCGAAATTGGGCAAGTACC 1737
BSNT_03936 847 TATCAGCGGATTCCCCGCCTGATTGATGA--CA-TGATGAAAGCAAAGGG 893
||.|||||.|||||.||.||.|||||||| || | ||||||.||| ||
BPUM_1680___y 1738 TACCAGCGTATTCCTCGTCTCATTGATGAAGCACT--TGAAAGTAAA-GG 1784
BSNT_03936 894 GGCATCGCGTTTAACAGAGATTGGGGAAGGTGACGCCGCCGATGATTTTG 943
||||..||||.||.|.||..|.||.|||||||||||.|.||..|||.|.|
BPUM_1680___y 1785 GGCAAAGCGTGTAGCTGATTTAGGAGAAGGTGACGCAGGCGGAGATATGG 1834
BSNT_03936 944 --------AAAG--CCATCGCGAGTCTTGGGAAAACCG-CTTCTGGA--- 979
|||| .||| ||..|||||..| |||| ||
BPUM_1680___y 1835 ATGAGGATAAAGAAACAT--------TTCAGAAAATAGTCTTC--GAGCA 1874
BSNT_03936 980 ---AGGAAACGATGGACGCATTTGATATTAACGAAATAGCCC-------A 1019
||.|||.|| ||||.|..|.| || |
BPUM_1680___y 1875 GTTAGCAAAAGA-------ATTTCAGCTCA----------CCTTCCAAGA 1907
BSNT_03936 1020 GAAAG---AAGACAGGCCTTCATTATCGATTGCTTTTCTCAGTGAAGCGA 1066
||||| |.||.|..||...|.||||..|.||||.|...|.|| |||.|
BPUM_1680___y 1908 GAAAGGGAAGGAAACCCCAAAACTATCAGTAGCTTATACAAATG-AGCTA 1956
BSNT_03936 1067 CGGA-AACG-CCGGTTGCTAAAGCATATGGCGCGTTTGAAGGGGTTGTGT 1114
|.| |||| ||.||.||.|||.|||||||.||.|||..||..|||||..
BPUM_1680___y 1957 -GTAGAACGTCCTGTGGCGAAAACATATGGTGCCTTTTCAGCTGTTGTAC 2005
BSNT_03936 1115 TAGAGAATCGAGAA-------CTCCAGACAGCTGACAGCACGCGTTCAAC 1157
|..|.|||..|||| |||.|.|.|| ||| |||...|||
BPUM_1680___y 2006 TGAAAAATGAAGAATTACAATCTCAAAAAAG-TGA------GCGGAAAAC 2048
BSNT_03936 1158 CTGCCATATTGAATTGGAAATTCCGGCTGGTAAAACATATAAAGAAGGCG 1207
..|.|||||.||.|||..|.|.||.|..||.||||.|||.||||||||.|
BPUM_1680___y 2049 AAGACATATAGAGTTGCGACTACCTGAAGGGAAAAAATACAAAGAAGGGG 2098
BSNT_03936 1208 ATCATATCGGAATCCTGCCGAAGAA-CAGCAGGGAGCTTGTTCAGCGGGT 1256
|||||||||||||..|.|||||.|| |...|.|.| ||.|||||||||||
BPUM_1680___y 2099 ATCATATCGGAATTGTTCCGAAAAATCGTGATGTA-CTCGTTCAGCGGGT 2147
BSNT_03936 1257 TCTCAGCCGATTCGGTTTGCAGTCCAATCATGTGATA-AAAGTAAGCGG- 1304
|||| |.|.|| |.||||| || |...|||||.|
BPUM_1680___y 2148 --------GATT--GATCGC--TTCAATC------TAGATCCTAAGCAGC 2179
BSNT_03936 1305 -----AAGCGCTCATATG--------GC---TCATCTGCCGATGGATCGG 1338
||||..||.|.|| || |||..|.||..|.|.||.|
BPUM_1680___y 2180 ACATCAAGCTTTCTTCTGAGAAAGAAGCAAATCACTTACCTTTAGGTCAG 2229
BSNT_03936 1339 CCGA-TCAAAGTTGCGGATTTATTGTCGTCCTATGTAGAGCTGCAGGAAC 1387
||.| |||||...|.|.|||..||| ||||..||||.|||||.||.||||
BPUM_1680___y 2230 CCCATTCAAATAAGAGAATTACTTG-CGTCACATGTTGAGCTTCAAGAAC 2278
BSNT_03936 1388 CGGCATCAAGGCTTCAGCTTCGGGAGCTGGCCTCTTATACAGTTTGTCCG 1437
|||||.||.|....|||||..|.|||||.|||||.|||||||||||||||
BPUM_1680___y 2279 CGGCAACACGTACGCAGCTAAGAGAGCTCGCCTCGTATACAGTTTGTCCG 2328
BSNT_03936 1438 CCGCATCAAAAAGAGCTGGAACA----GCTCGTTTCAGATGATGGCATTT 1483
||.||||.....|||||.||.|| ||| |.||| .||||.|
BPUM_1680___y 2329 CCTCATCGCGTGGAGCTTGAGCAAATGGCT-------GGTGA-AGCATAT 2370
BSNT_03936 1484 ACAAAGAGCAGGTACTTGCA--AAACGTCTTACCATGCTTGATTTTTTAG 1531
|| ||.||.||.||..| |||||..|.||||||||.|||||..|||
BPUM_1680___y 2371 -CA---AGAAGCTATTTTAAAGAAACGAGTCACCATGCTGGATTTACTAG 2416
BSNT_03936 1532 AGGATTATCCTGCTTGCGAAATGCCGTTTGAACGGTTTTTAGCACTTTTG 1581
|..|.|||...||.||.||||||||.||||..|..||||||||||||||.
BPUM_1680___y 2417 ATCAATATGAAGCATGTGAAATGCCATTTGCGCACTTTTTAGCACTTTTA 2466
BSNT_03936 1582 CCATCACTAAAACCGAGATACTATTCCATTTCAAGCTCACCGAAAGTTC- 1630
|||....|.||.||..|.||.|||||.|||||.|||||||| ||||.||
BPUM_1680___y 2467 CCAGGTTTGAAGCCTCGTTATTATTCTATTTCTAGCTCACC-AAAGATCG 2515
BSNT_03936 1631 ATGCAAATATCGTGAGCATGACGGTAGGAGTTGTGAAAGCCTCAGCATGG 1680
|||..||.|..||.||.||.||.||.|..||||||||||....|||.|||
BPUM_1680___y 2516 ATGAGAAAAGAGTCAGTATCACAGTGGCGGTTGTGAAAGGGAAAGCGTGG 2565
BSNT_03936 1681 AGCGGCCGAGGTGAATACCGGGGTGTCGCCTCTAATTATTTA-GCAGAGT 1729
||||||||.||||||||....||.|||||.||.||.|||||| || ||..
BPUM_1680___y 2566 AGCGGCCGCGGTGAATATGCAGGAGTCGCATCAAACTATTTATGC-GATC 2614
BSNT_03936 1730 TGAATACAGGTGATGCAGCAGCCTGCTTCATTCGTACG--CCGCAGTCCG 1777
||.|.|.|||.||.|.||..|||||||||.||| ||| .|||||.|.|
BPUM_1680___y 2615 TGCAAAAAGGAGAAGAAGTCGCCTGCTTCCTTC--ACGAAGCGCAGGCAG 2662
BSNT_03936 1778 GATTCCAGATGCCGGATGAGCCT------GAAACGCCTATGATTATGGTC 1821
||||||||.|||| |||| |||||.||.|||||.|||.||
BPUM_1680___y 2663 GATTCCAGCTGCC------GCCTTCATCCGAAACACCGATGATCATGATC 2706
BSNT_03936 1822 GGGCCGGGCACAGGAATTGCGCCATTCAGGGGCTTTATTCAGGCAAGATC 1871
||.||.||.||||||||.||.|||||.||.||.|||.|||||||||||..
BPUM_1680___y 2707 GGACCTGGTACAGGAATCGCTCCATTTAGAGGATTTGTTCAGGCAAGAGA 2756
BSNT_03936 1872 GGTTTTGAAGAAGGAAGG-AAGC-ACCCTTGGTGAAG--CACTTTTATAC 1917
.||.|.|.|||||||||| |||| | ||.||||||| |||.|.|||
BPUM_1680___y 2757 AGTGTGGCAGAAGGAAGGCAAGCGA--CTAGGTGAAGCTCACCTGTAT-- 2802
BSNT_03936 1918 TTCGGCTGCCGCCGCCCGGACCATGACGACCTTTACAGAGAAGAGCTGGA 1967
||.||||||||.|.||| .||||| |||.||.|||.|
BPUM_1680___y 2803 TTTGGCTGCCGTCACCC---TCATGA------------AGATGATCTGTA 2837
BSNT_03936 1968 T------------CA------AGCGGAACAGGAAGGTTTGGTCACAATCC 1999
| || ||||.||.|.|.|| |||.|||| ||||
BPUM_1680___y 2838 TTTTGAGGAAATGCAGCTTGCAGCGCAAAAAGGAG--TTGTTCAC-ATCC 2884
BSNT_03936 2000 GCCG-----ATGCTACTCGCGCGTCAAAAACGAACCAAAAGAATATGTCC 2044
|||| ||.|| |||||.||| ||.|.|||||.||||||||
BPUM_1680___y 2885 GCCGGGCTTATTCT-------CGTCACAAA-GACCAAAAAGTATATGTCC 2926
BSNT_03936 2045 AGCACTTGCTCAAGCAAGA------TACGC---AGAAATTGATGACACTC 2085
||||.|||.|.||..|||| ||.|| ..||||| ||||
BPUM_1680___y 2927 AGCATTTGTTAAAAGAAGACGGCGGTATGCTCATCAAATT------ACTC 2970
BSNT_03936 2086 ATTGAAAAAGGGGCTCATATTTACGTATGCGGTGATGGATCACAA----A 2131
||..||||.||..|..|||||||.|||||.||.||| || |
BPUM_1680___y 2971 ---GATGAAGGTGCGTACCTTTACGTGTGCGGAGACGGA----AAAGTCA 3013
BSNT_03936 2132 TGGCTCCTGATGTAGAGAAGACTTTGCGATTGGC--GTATGAAGCTGAAA 2179
||||.||.||.||||||...||.|| |||.|.| .|||.||...||.|
BPUM_1680___y 3014 TGGCACCAGACGTAGAGTCTACATT--GATCGACCTCTATCAACACGAGA 3061
BSNT_03936 2180 AAGGAGCAAGTC----AGGAAGAATCAGCTGAA---TGGCTGCAAAAGCT 2222
|| |||..| ||||||| .|||||| |||||...||..||
BPUM_1680___y 3062 AA----CAATGCTCGAAGGAAGA---TGCTGAAAATTGGCTAACAACCCT 3104
BSNT_03936 2223 -GCAA--GATCAAAGACGTTATGTGAAAGACGTTTGGACAGGAATG-TAA 2268
|||| .||.|.||| |||||.|||||.||.|||| | |||
BPUM_1680___y 3105 AGCAAATAATAATAGA---TATGTAAAAGATGTATGGA-------GCTAA 3144
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