Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03936 and BPUM_1680

See Amino acid alignment / Visit BSNT_03936 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:25
# Commandline: needle
#    -asequence dna-align/BSNT_03936.1.24716.seq
#    -bsequence dna-align/BPUM_1680___yrhJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03936-BPUM_1680___yrhJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03936-BPUM_1680___yrhJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03936
# 2: BPUM_1680___yrhJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3350
# Identity:    1542/3350 (46.0%)
# Similarity:  1542/3350 (46.0%)
# Gaps:        1288/3350 (38.4%)
# Score: 4334.0
# 
#
#=======================================

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y      1 ATGCAACAAACATCAATCATTCCAAAACCAAAAACATACGGACCTTTTAA     50

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y     51 AAATATTCCTCATATCAAAAAGGGGGAGCTTTCTCAAACCTTTTGGCGGC    100

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    101 TGGCAGACGAATTAGGACCGATCTTTCAATTTGAATTTTCAAAAGCAACA    150

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    151 AGTATTTTTGTTTCCAGCCATGAACTTGCCAAAGAAGTATTTGATGAGAG    200

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    201 CCGTTTTGATAAATTCATCGGGAGCAGTCTGAATAAAGTAAGAACATTTT    250

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    251 CAGGGGATGGGTTATTTACAAGCTGGACAGAAGAACCGAACTGGAGAAAG    300

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    301 GCTCATCACATCTTGATGCCGGCGTTTAGTCAGCAGGCTATGAAGGGGTA    350

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    351 CCATGAGATGATGCTCGATATTGCCACACAGCTTGTACAAAAATGGCAAA    400

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    401 GAACAGGCCGTGATGAAGAAATTGAAGTAGCAGAGGATATGACAAAGCTC    450

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    451 ACTTTAGATACGATTGGACTTTGTGGTTTTGACTTCAGGTTTAACAGCTT    500

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    501 TTATAAAGAAAATCAGCATCCTTTCATCGAAAGCATGCTGAACGGGTTAA    550

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    551 ACGAAGCGATGGAACAAGCAAGTAGGTTGCCGGTTGCAGATAAATTAATG    600

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    601 ATCAAAAGAAGAAAAAAATTTGAAGAAAATGTAGATTTTATGAAGACATT    650

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    651 AGTAGACGACATTATTCAAGAACGGAGAAAACAAGATAAAACGGGCAATG    700

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    701 ATTTACTGTCCCTTATGCTTCATGCAAAGGACCCTGAAACAGGTGAGCGC    750

BSNT_03936         0 --------------------------------------------------      0
                                                                       
BPUM_1680___y    751 CTGTCAGATGAAAATATTCGCTATCAAATCATTACCTTCTTAATAGCTGG    800

BSNT_03936         1 -------------------------------------------GTGTTAA      7
                                                                .|.||||
BPUM_1680___y    801 GCACGAAACAACAAGCGGGCTGTTATCCTTTGCGATTTATTTCTTATTAA    850

BSNT_03936         8 CGGATGACACGCCTGAATA--TAAACAAATCC------------------     37
                           |.|..||.|||.|  ||||.|||.||                  
BPUM_1680___y    851 ------AAAATCCAGAAAAATTAAAGAAAGCCGTCCAAGAAGCAGATGAT    894

BSNT_03936        38 ----------------------------AGCAGCT-CAAA--------TA     50
                                                 |||||.| ||||        ||
BPUM_1680___y    895 GTGCTGCAAGGCGAACTGCCAACATTTAAGCAGGTACAAAAACTAACTTA    944

BSNT_03936        51 CACTCGGATGGTTTTAAATGAAACCCTCAGACTGTATCCAACAGCTCCGG    100
                     ||||||.|||||||||||||||.|||||.|.||.|..||||||||.||..
BPUM_1680___y    945 CACTCGTATGGTTTTAAATGAAGCCCTCCGCCTCTGGCCAACAGCGCCTA    994

BSNT_03936       101 CTTTTTCTCTATATGCGAAGGAGGATACTGTTCTAGGCGGGGAATATCCG    150
                     |.||.|||||.||||||||.|||||.||..|..|.||.|||.||||..||
BPUM_1680___y    995 CGTTCTCTCTTTATGCGAAAGAGGACACAATCATCGGAGGGAAATACTCG   1044

BSNT_03936       151 ATCAGCAAAGGGCAGCCA----GTCACTGTTTTAATTCCAAAACTGCACC    196
                     ||.|  |||.|  |.|||    ||..|.|||.||.|.||.|||.|.||||
BPUM_1680___y   1045 ATTA--AAAAG--AACCAAAGTGTTTCCGTTCTACTCCCTAAATTACACC   1090

BSNT_03936       197 GGGACCAAAACGCT-TGGGGGCCGGATGCGGAAGATTTCCGTCCGGAACG    245
                     |.||.| ||.||.| |||||...||||||||||||.||....||.||.||
BPUM_1680___y   1091 GTGATC-AAGCGGTATGGGGAGGGGATGCGGAAGAATTTAAACCAGAGCG   1139

BSNT_03936       246 GTTTGAGGATCCTTCAAGTATCCCTCACCATGCGTATAAGCCGTTTGGAA    295
                     .|||..|.|.|||..||..|||||.||.|||||.||.|||||.|||||.|
BPUM_1680___y   1140 TTTTCTGCACCCTGAAAAGATCCCGCAGCATGCCTACAAGCCTTTTGGGA   1189

BSNT_03936       296 ACGGACAGCGCGCTTGTATTGGCATGCAGTTTGCTCTTCAAGAAGCGACA    345
                     |.||||||||.||.||||||||.|||||.|||||||||||.|||||.||.
BPUM_1680___y   1190 ATGGACAGCGTGCATGTATTGGTATGCAATTTGCTCTTCATGAAGCCACT   1239

BSNT_03936       346 ATGGTTCT-----CGGTCTTGTATTAAAGCATTTTGAATTGATTAACCAT    390
                     |||||.||     .|||||||.|..|.|     |.|||||||||.|.||.
BPUM_1680___y   1240 ATGGTACTGGCAATGGTCTTGCACAACA-----TGGAATTGATTGATCAC   1284

BSNT_03936       391 ACTGGCTACGAACTAAAAATCAAAGAAGCATTAACGATCAAGCCGGATGA    440
                     ||....||||||||.||..|.||||||.|.||||||||.|||||..|.||
BPUM_1680___y   1285 ACATCATACGAACTTAATTTAAAAGAATCTTTAACGATTAAGCCAAACGA   1334

BSNT_03936       441 TTTTAAAATTACTGTGAAACCGCGGAAAACAGCGGCAA---TCAATGTAC    487
                     |||||||||.|..|||...||..|||    |||.||||   |..|||   
BPUM_1680___y   1335 TTTTAAAATCAAAGTGCGGCCAAGGA----AGCAGCAACTCTTTATG---   1377

BSNT_03936       488 AGAGAAAAGAACAGGCAGAAATCAAAGCAGAAACAAAGCCAAAAGAA--A    535
                             |.||.|.|      .||||.|||||||||  .|||||.|  |
BPUM_1680___y   1378 --------GCACCGCC------GAAAGAAGAAACAAA--AAAAAGCACCA   1411

BSNT_03936       536 CCA------AACCTAAA---------CACGGCACACCTTTACTCGTTCTT    570
                     |||      |..|||||         ||.||.|||||..||||.|||.|.
BPUM_1680___y   1412 CCATTGAAGAGTCTAAAGTGAAGAGTCATGGTACACCACTACTTGTTTTA   1461

BSNT_03936       571 TACGGTTCAAACCTTGGGACAGCTGAGGGAATAGCCGATGAATTGGCTTC    620
                     ||.||.|||||.|||||.|||||..||..|||.||..|.|||||||   |
BPUM_1680___y   1462 TATGGATCAAATCTTGGTACAGCGCAGCAAATCGCAAACGAATTGG---C   1508

BSNT_03936       621 TCAAGGCCG----CCAGATGGGCTTTACAGCTGA-AACGGCTCCGCTTGA    665
                     |.|||.|.|    .||.|.||..||.|.|  ||| .|||||||||||.||
BPUM_1680___y   1509 TGAAGACGGAAAAGCAAAAGGATTTGATA--TGACCACGGCTCCGCTCGA   1556

BSNT_03936       666 TGATTATATCG-GCAAGCTCCCTGAAGAAGGG-GCAGTCGTCATTGTAAC    713
                     |||.||| .|| ||.|..|.||.| |.||||| |||||..|.||.||.||
BPUM_1680___y   1557 TGACTAT-GCGCGCCAATTACCAG-ATAAGGGTGCAGTTCTTATCGTGAC   1604

BSNT_03936       714 GGCTTCTTATAATGGGTCGCCGCCTGATAATGCTGCCGG-----CTTTGT    758
                     .|||||.||.|||||....||||||||..||||     |     .|||||
BPUM_1680___y   1605 CGCTTCATACAATGGACATCCGCCTGACCATGC-----GAAAACATTTGT   1649

BSNT_03936       759 AGAGTGGCT---------GAAAGAGCTTGAGGAAGGCCAATT---GAAAG    796
                     .||.|||.|         .|||||       |||||   |||   .|||.
BPUM_1680___y   1650 GGATTGGGTCACGCAGGATAAAGA-------GAAGG---ATTTAACAAAC   1689

BSNT_03936       797 GTGTTTCCTATGCGGTATTCGGCTGCGGGAACCGGAGCTGGGCCAGCACG    846
                     |||  .|.|.|||.||.||.||.||||||.|.||.|..|||||.||.||.
BPUM_1680___y   1690 GTG--ACATTTGCTGTGTTTGGATGCGGGGATCGAAATTGGGCAAGTACC   1737

BSNT_03936       847 TATCAGCGGATTCCCCGCCTGATTGATGA--CA-TGATGAAAGCAAAGGG    893
                     ||.|||||.|||||.||.||.||||||||  || |  ||||||.||| ||
BPUM_1680___y   1738 TACCAGCGTATTCCTCGTCTCATTGATGAAGCACT--TGAAAGTAAA-GG   1784

BSNT_03936       894 GGCATCGCGTTTAACAGAGATTGGGGAAGGTGACGCCGCCGATGATTTTG    943
                     ||||..||||.||.|.||..|.||.|||||||||||.|.||..|||.|.|
BPUM_1680___y   1785 GGCAAAGCGTGTAGCTGATTTAGGAGAAGGTGACGCAGGCGGAGATATGG   1834

BSNT_03936       944 --------AAAG--CCATCGCGAGTCTTGGGAAAACCG-CTTCTGGA---    979
                             ||||  .|||        ||..|||||..| ||||  ||   
BPUM_1680___y   1835 ATGAGGATAAAGAAACAT--------TTCAGAAAATAGTCTTC--GAGCA   1874

BSNT_03936       980 ---AGGAAACGATGGACGCATTTGATATTAACGAAATAGCCC-------A   1019
                        ||.|||.||       ||||.|..|.|          ||       |
BPUM_1680___y   1875 GTTAGCAAAAGA-------ATTTCAGCTCA----------CCTTCCAAGA   1907

BSNT_03936      1020 GAAAG---AAGACAGGCCTTCATTATCGATTGCTTTTCTCAGTGAAGCGA   1066
                     |||||   |.||.|..||...|.||||..|.||||.|...|.|| |||.|
BPUM_1680___y   1908 GAAAGGGAAGGAAACCCCAAAACTATCAGTAGCTTATACAAATG-AGCTA   1956

BSNT_03936      1067 CGGA-AACG-CCGGTTGCTAAAGCATATGGCGCGTTTGAAGGGGTTGTGT   1114
                      |.| |||| ||.||.||.|||.|||||||.||.|||..||..|||||..
BPUM_1680___y   1957 -GTAGAACGTCCTGTGGCGAAAACATATGGTGCCTTTTCAGCTGTTGTAC   2005

BSNT_03936      1115 TAGAGAATCGAGAA-------CTCCAGACAGCTGACAGCACGCGTTCAAC   1157
                     |..|.|||..||||       |||.|.|.|| |||      |||...|||
BPUM_1680___y   2006 TGAAAAATGAAGAATTACAATCTCAAAAAAG-TGA------GCGGAAAAC   2048

BSNT_03936      1158 CTGCCATATTGAATTGGAAATTCCGGCTGGTAAAACATATAAAGAAGGCG   1207
                     ..|.|||||.||.|||..|.|.||.|..||.||||.|||.||||||||.|
BPUM_1680___y   2049 AAGACATATAGAGTTGCGACTACCTGAAGGGAAAAAATACAAAGAAGGGG   2098

BSNT_03936      1208 ATCATATCGGAATCCTGCCGAAGAA-CAGCAGGGAGCTTGTTCAGCGGGT   1256
                     |||||||||||||..|.|||||.|| |...|.|.| ||.|||||||||||
BPUM_1680___y   2099 ATCATATCGGAATTGTTCCGAAAAATCGTGATGTA-CTCGTTCAGCGGGT   2147

BSNT_03936      1257 TCTCAGCCGATTCGGTTTGCAGTCCAATCATGTGATA-AAAGTAAGCGG-   1304
                             ||||  |.|.||  |.|||||      || |...|||||.| 
BPUM_1680___y   2148 --------GATT--GATCGC--TTCAATC------TAGATCCTAAGCAGC   2179

BSNT_03936      1305 -----AAGCGCTCATATG--------GC---TCATCTGCCGATGGATCGG   1338
                          ||||..||.|.||        ||   |||..|.||..|.|.||.|
BPUM_1680___y   2180 ACATCAAGCTTTCTTCTGAGAAAGAAGCAAATCACTTACCTTTAGGTCAG   2229

BSNT_03936      1339 CCGA-TCAAAGTTGCGGATTTATTGTCGTCCTATGTAGAGCTGCAGGAAC   1387
                     ||.| |||||...|.|.|||..||| ||||..||||.|||||.||.||||
BPUM_1680___y   2230 CCCATTCAAATAAGAGAATTACTTG-CGTCACATGTTGAGCTTCAAGAAC   2278

BSNT_03936      1388 CGGCATCAAGGCTTCAGCTTCGGGAGCTGGCCTCTTATACAGTTTGTCCG   1437
                     |||||.||.|....|||||..|.|||||.|||||.|||||||||||||||
BPUM_1680___y   2279 CGGCAACACGTACGCAGCTAAGAGAGCTCGCCTCGTATACAGTTTGTCCG   2328

BSNT_03936      1438 CCGCATCAAAAAGAGCTGGAACA----GCTCGTTTCAGATGATGGCATTT   1483
                     ||.||||.....|||||.||.||    |||       |.||| .||||.|
BPUM_1680___y   2329 CCTCATCGCGTGGAGCTTGAGCAAATGGCT-------GGTGA-AGCATAT   2370

BSNT_03936      1484 ACAAAGAGCAGGTACTTGCA--AAACGTCTTACCATGCTTGATTTTTTAG   1531
                      ||   ||.||.||.||..|  |||||..|.||||||||.|||||..|||
BPUM_1680___y   2371 -CA---AGAAGCTATTTTAAAGAAACGAGTCACCATGCTGGATTTACTAG   2416

BSNT_03936      1532 AGGATTATCCTGCTTGCGAAATGCCGTTTGAACGGTTTTTAGCACTTTTG   1581
                     |..|.|||...||.||.||||||||.||||..|..||||||||||||||.
BPUM_1680___y   2417 ATCAATATGAAGCATGTGAAATGCCATTTGCGCACTTTTTAGCACTTTTA   2466

BSNT_03936      1582 CCATCACTAAAACCGAGATACTATTCCATTTCAAGCTCACCGAAAGTTC-   1630
                     |||....|.||.||..|.||.|||||.|||||.|||||||| ||||.|| 
BPUM_1680___y   2467 CCAGGTTTGAAGCCTCGTTATTATTCTATTTCTAGCTCACC-AAAGATCG   2515

BSNT_03936      1631 ATGCAAATATCGTGAGCATGACGGTAGGAGTTGTGAAAGCCTCAGCATGG   1680
                     |||..||.|..||.||.||.||.||.|..||||||||||....|||.|||
BPUM_1680___y   2516 ATGAGAAAAGAGTCAGTATCACAGTGGCGGTTGTGAAAGGGAAAGCGTGG   2565

BSNT_03936      1681 AGCGGCCGAGGTGAATACCGGGGTGTCGCCTCTAATTATTTA-GCAGAGT   1729
                     ||||||||.||||||||....||.|||||.||.||.|||||| || ||..
BPUM_1680___y   2566 AGCGGCCGCGGTGAATATGCAGGAGTCGCATCAAACTATTTATGC-GATC   2614

BSNT_03936      1730 TGAATACAGGTGATGCAGCAGCCTGCTTCATTCGTACG--CCGCAGTCCG   1777
                     ||.|.|.|||.||.|.||..|||||||||.|||  |||  .|||||.|.|
BPUM_1680___y   2615 TGCAAAAAGGAGAAGAAGTCGCCTGCTTCCTTC--ACGAAGCGCAGGCAG   2662

BSNT_03936      1778 GATTCCAGATGCCGGATGAGCCT------GAAACGCCTATGATTATGGTC   1821
                     ||||||||.||||      ||||      |||||.||.|||||.|||.||
BPUM_1680___y   2663 GATTCCAGCTGCC------GCCTTCATCCGAAACACCGATGATCATGATC   2706

BSNT_03936      1822 GGGCCGGGCACAGGAATTGCGCCATTCAGGGGCTTTATTCAGGCAAGATC   1871
                     ||.||.||.||||||||.||.|||||.||.||.|||.|||||||||||..
BPUM_1680___y   2707 GGACCTGGTACAGGAATCGCTCCATTTAGAGGATTTGTTCAGGCAAGAGA   2756

BSNT_03936      1872 GGTTTTGAAGAAGGAAGG-AAGC-ACCCTTGGTGAAG--CACTTTTATAC   1917
                     .||.|.|.|||||||||| |||| |  ||.|||||||  |||.|.|||  
BPUM_1680___y   2757 AGTGTGGCAGAAGGAAGGCAAGCGA--CTAGGTGAAGCTCACCTGTAT--   2802

BSNT_03936      1918 TTCGGCTGCCGCCGCCCGGACCATGACGACCTTTACAGAGAAGAGCTGGA   1967
                     ||.||||||||.|.|||   .|||||            |||.||.|||.|
BPUM_1680___y   2803 TTTGGCTGCCGTCACCC---TCATGA------------AGATGATCTGTA   2837

BSNT_03936      1968 T------------CA------AGCGGAACAGGAAGGTTTGGTCACAATCC   1999
                     |            ||      ||||.||.|.|.||  |||.|||| ||||
BPUM_1680___y   2838 TTTTGAGGAAATGCAGCTTGCAGCGCAAAAAGGAG--TTGTTCAC-ATCC   2884

BSNT_03936      2000 GCCG-----ATGCTACTCGCGCGTCAAAAACGAACCAAAAGAATATGTCC   2044
                     ||||     ||.||       |||||.||| ||.|.|||||.||||||||
BPUM_1680___y   2885 GCCGGGCTTATTCT-------CGTCACAAA-GACCAAAAAGTATATGTCC   2926

BSNT_03936      2045 AGCACTTGCTCAAGCAAGA------TACGC---AGAAATTGATGACACTC   2085
                     ||||.|||.|.||..||||      ||.||   ..|||||      ||||
BPUM_1680___y   2927 AGCATTTGTTAAAAGAAGACGGCGGTATGCTCATCAAATT------ACTC   2970

BSNT_03936      2086 ATTGAAAAAGGGGCTCATATTTACGTATGCGGTGATGGATCACAA----A   2131
                        ||..||||.||..|..|||||||.|||||.||.|||    ||    |
BPUM_1680___y   2971 ---GATGAAGGTGCGTACCTTTACGTGTGCGGAGACGGA----AAAGTCA   3013

BSNT_03936      2132 TGGCTCCTGATGTAGAGAAGACTTTGCGATTGGC--GTATGAAGCTGAAA   2179
                     ||||.||.||.||||||...||.||  |||.|.|  .|||.||...||.|
BPUM_1680___y   3014 TGGCACCAGACGTAGAGTCTACATT--GATCGACCTCTATCAACACGAGA   3061

BSNT_03936      2180 AAGGAGCAAGTC----AGGAAGAATCAGCTGAA---TGGCTGCAAAAGCT   2222
                     ||    |||..|    |||||||   .||||||   |||||...||..||
BPUM_1680___y   3062 AA----CAATGCTCGAAGGAAGA---TGCTGAAAATTGGCTAACAACCCT   3104

BSNT_03936      2223 -GCAA--GATCAAAGACGTTATGTGAAAGACGTTTGGACAGGAATG-TAA   2268
                      ||||  .||.|.|||   |||||.|||||.||.||||       | |||
BPUM_1680___y   3105 AGCAAATAATAATAGA---TATGTAAAAGATGTATGGA-------GCTAA   3144


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