Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02251 and BPUM_1666
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence pep-align/BSNT_02251___ligD.1.24716.seq
# -bsequence pep-align/BPUM_1666___ligD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02251___ligD-BPUM_1666___ligD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02251___ligD-BPUM_1666___ligD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02251___ligD
# 2: BPUM_1666___ligD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 621
# Identity: 233/621 (37.5%)
# Similarity: 341/621 (54.9%)
# Gaps: 56/621 ( 9.0%)
# Score: 1165.0
#
#
#=======================================
BSNT_02251___ 1 ---------------------------------------------MELSS 5
..|:.
BPUM_1666___l 1 MKPMRLTAAHDVPTGADWVYELKYDGFRVILTWDQNEIHLESRAGKRLNE 50
BSNT_02251___ 6 TFPEITQFAKTAFQHLEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKR 55
.|||:.:..:....|....||||.|||:|.|::..::||..:|.|||||.
BPUM_1666___l 51 QFPEVIEQCEQLRDHFAPLLPLTFDGELVFLLDEQQSDFARVQQRGRLKN 100
BSNT_02251___ 56 PDKIQESANARPCCFLAFDLLERSGEDVTLLSYLDRKKSLRELISAAKLP 105
.:.|:..|...||..:|||||...|:.:..|..::||..|:::..|||||
BPUM_1666___l 101 KEAIKLQAERFPCHLIAFDLLRCKGKSLIDLPLMERKTQLQQVFKAAKLP 150
BSNT_02251___ 106 ASPDPYAKETIQSIPCYDHFDQLWEMVIKYDGEGIVAKKTNSKWLEKKRS 155
:|........:|.|....:.:.:.:::..|..||:||||..|||.:..||
BPUM_1666___l 151 SSVQLEHPSLLQLIHTDTNSEHMKKLMTTYLAEGLVAKKRTSKWHDHTRS 200
BSNT_02251___ 156 SDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGIMTPIASVSHGMRDEE 205
.:|||.||::...|.:|.|:..||:....:.::..:|.:....||...||
BPUM_1666___l 201 KEWLKVKNWRYVSVIVTRFDKENGYFQGCIYQDHHLTEVVQFKHGFSKEE 250
BSNT_02251___ 206 KSAIREIMEQHGHQTPSGEFKLEPSICAAVQYLTILHGTLREVSFIGFEF 255
:..:|.:.:.:|.||.:..:::.|||.|::..::.....|||..|..|..
BPUM_1666___l 251 EQTLRTLFQTNGKQTGASAYEIPPSIVASIACISFDGSALREPRFSSFLL 300
BSNT_02251___ 256 QMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQYMIEV 305
..|.|.||:.|:::...|:...::.|..:|.|.......|.|::.|:.:.
BPUM_1666___l 301 DTDPTACTFQQMLKQLYPLPTVIEITHPEKPIVPALHLNKADYLLYLRQA 350
BSNT_02251___ 306 SDYLLPFLKNRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHEH 355
:.||||||:.|.:|:||:|||:..|.|:||:.||||||:|.:.......:
BPUM_1666___l 351 APYLLPFLRERRLTLIRFPHGAGDEFFYQKSTPDYAPDYVLTDQADDIAY 400
BSNT_02251___ 356 IVCEDMSTLLWLCNQLALEFHVPFQTIKSRRPAEIVIDLDPPSRDDFLMA 405
.||.|..|||||.||||:|||:||:|..:.||.|||.||||||.::|.:|
BPUM_1666___l 401 TVCNDPQTLLWLGNQLAMEFHIPFETRDTDRPTEIVFDLDPPSVNEFHLA 450
BSNT_02251___ 406 VQAANELKRLLDSFGITSYPKLSGNKGIQLYIPLSPEAFTYEETRQFTQL 455
::||..:|.|||...:|::.|.||.||:|:||||...||||||||.||..
BPUM_1666___l 451 IEAAKRIKTLLDGLFLTAFIKTSGGKGLQVYIPLKKNAFTYEETRTFTAF 500
BSNT_02251___ 456 IAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTIICPYSTRGNEL 505
|.::.....|||||.|||.|.|..:|||||:||..|||||.|||.|||||
BPUM_1666___l 501 ICQFLCEQAPELFTLERLKKKRGNRLYLDYIQHDAGKTIIAPYSPRGNEL 550
BSNT_02251___ 506 GTVAAPLYWHEV-QSSLTPALFTIDTVIDRIKKQGCPFFDFYRNPQDEPL 554
|.||.||.|.|: |..|.|:|||:.:||:|:|::|.||........|:..
BPUM_1666___l 551 GLVATPLEWDELRQDGLHPSLFTMPSVIERLKEKGDPFRRMRHLVNDDTF 600
BSNT_02251___ 555 SAILHQLKKKS---------- 565
..:||:|:...
BPUM_1666___l 601 RQVLHRLEDMIPAHKMDIRGH 621
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