Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02251 and BPUM_1666
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:42
# Commandline: needle
# -asequence dna-align/BSNT_02251___ligD.1.24716.seq
# -bsequence dna-align/BPUM_1666___ligD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02251___ligD-BPUM_1666___ligD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02251___ligD-BPUM_1666___ligD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02251___ligD
# 2: BPUM_1666___ligD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2185
# Identity: 1039/2185 (47.6%)
# Similarity: 1039/2185 (47.6%)
# Gaps: 806/2185 (36.9%)
# Score: 2195.5
#
#
#=======================================
BSNT_02251___ 0 -------------------------------------------------- 0
BPUM_1666___l 1 ATGAAACCTATGCGATTAACGGCTGCACATGATGTTCCTACCGGTGCAGA 50
BSNT_02251___ 1 ---------------------------------------------GTGGA 5
||||
BPUM_1666___l 51 CTGGGTGTATGAATTAAAATATGACGGCTTTCGAGTCATTCTGACGTGG- 99
BSNT_02251___ 6 GCTCAGCAGCACCTTC---------------CCTGAAATC------AC-- 32
|.|||..|..|..||| ||.||||.| ||
BPUM_1666___l 100 GATCAAAACGAAATTCATTTAGAAAGCAGAGCCGGAAAACGATTAAACGA 149
BSNT_02251___ 33 ACAATTCGCC----------AAAACTGC---------------CTTTCAG 57
|||.||..|| ||.|.||| |.||..|
BPUM_1666___l 150 ACAGTTTCCCGAGGTGATTGAACAGTGCGAACAATTAAGGGATCATTTTG 199
BSNT_02251___ 58 CACCTAGAAAAAGAGCTT-CCGCTGACACTTGACGGTGAAATCGTATGTT 106
|.|||..| || ||..||||..||||.||.|||.|.||.|.||
BPUM_1666___l 200 CTCCTTTA--------TTACCATTGACGTTTGATGGAGAATTGGTCTTTT 241
BSNT_02251___ 107 TGGTGAATCCCTGTCGTGCAGATTTTGAACACCTTCAAG------TGCGG 150
||.||.| ||||||.| .||| ||||.
BPUM_1666___l 242 TGCTGGA------------------TGAACAAC--AAAGCGACTTTGCGA 271
BSNT_02251___ 151 GGGCGTTT---GAAAAGGCCAG--------ACAA------GATTCAGGAA 183
||| || .|||.||.||| |||| |||| ||
BPUM_1666___l 272 GGG---TTCAGCAAAGGGGCAGGCTGAAAAACAAAGAGGCGATT----AA 314
BSNT_02251___ 184 TCGGCAAACGCGCGGCCGTGCTGCTTTC------------TCGCCTTTGA 221
.|.||| |||.|.|| |.|||| ||||.|||||
BPUM_1666___l 315 GCTGCA-------GGCTGAGC-GGTTTCCATGTCATTTGATCGCATTTGA 356
BSNT_02251___ 222 TTTGTT-AGA-GCGAAGCGGAGAAGATGTAACGCTTCTTTCGT--ATT-- 265
|||.|| ||| ||.||| |||.| |||.||.| |||
BPUM_1666___l 357 TTTATTAAGATGCAAAG-GGAAA------------TCTCTCATTGATTTG 393
BSNT_02251___ 266 -------TGGACCGCAAAA---AATCGCTGCGTGAACTCATATCCGCAGC 305
||||..|.|||| |||..|.||..|...|||.| |||||
BPUM_1666___l 394 CCGTTGATGGAAAGGAAAACACAATTACAGCAAGTTTTCAAA---GCAGC 440
BSNT_02251___ 306 AAAGCTTCCTGCATCTCCAGATC--CTTACGCAAAAGAAACC-------- 345
|||.||.||..||||| |.|| |||..|| |||
BPUM_1666___l 441 AAAACTCCCGTCATCT---GTTCAGCTTGAGC-------ACCCTTCCCTT 480
BSNT_02251___ 346 ATTCAATCCATTCCCTGTTAT---GATC----ATTTTGATCAACTCTGGG 388
.|||||..||||| || || | |||.|||.|
BPUM_1666___l 481 CTTCAACTCATTC------ATACAGA-CACAAATTCTGAAC--------- 514
BSNT_02251___ 389 AGATGGTAATAAAAT-ATGAC----------GGAGAAGGAATTGTAGCGA 427
|.||| ||.|||.| ||||| |.|||||||.||||.||||
BPUM_1666___l 515 ATATG--AAAAAACTGATGACGACCTATCTTGCAGAAGGACTTGTTGCGA 562
BSNT_02251___ 428 AGAAAACAAACAGCAAATGGCTTGAAAAGAAGCGGTCGTCCGATTGGCTC 477
|.||||..|..||.|||||||..||..|.|..|||||....||.||||||
BPUM_1666___l 563 AAAAAAGGACGAGTAAATGGCACGACCATACCCGGTCAAAAGAATGGCTC 612
BSNT_02251___ 478 AAATATAAAAACTTTAAACAAGCTTATGT--TTGCATAACAGGGTTCAAC 525
|||...|||||||....|.|.|.||.||| ||| |.||..|.||..|
BPUM_1666___l 613 AAAGTCAAAAACTGGCGATATGTTTCTGTCATTG--TGACTCGTTTTGA- 659
BSNT_02251___ 526 CCTAA--CAACGGGTTTCT-----GACGGTATCGGTGTTAAAAAACGGA- 567
||| .||..||.|.|| |.|.|||| |||..|| ||
BPUM_1666___l 660 --TAAAGAAAATGGCTACTTTCAGGGCTGTAT-----TTATCAA---GAT 699
BSNT_02251___ 568 -ATAATGACACCGA--TTG-CCTCTGTCTCGCACGG--------AATGCG 605
||.||..|||.|| ||| ||..| ||..|||.|| ||
BPUM_1666___l 700 CATCATCTCACTGAGGTTGTCCAAT-TCAAGCATGGATTTTCTAAA---- 744
BSNT_02251___ 606 CGATGAGGAAAAAAGCGCTA--TACGC-------GAGATTATGG------ 640
||.||.|||.||| ||||| |||.| ||.| .||||
BPUM_1666___l 745 -GAAGAAGAACAAA-CGCTACGTACACTCTTTCAGACA-AATGGCAAGCA 791
BSNT_02251___ 641 AACAGCACGGACATC--------AAA---CACCCTC-----AGGCGAG-- 672
||||| ||.|||| ||| ||||.|| ..|||||
BPUM_1666___l 792 AACAG---GGGCATCAGCATATGAAATCCCACCATCTATCGTCGCGAGCA 838
BSNT_02251___ 673 TTTAAGCTTGAACCTTCGATTTGTGCAGCTGTTCAATACTTAACAATTCT 722
|| |||||.|.||.| ||||
BPUM_1666___l 839 TT---GCTTGTATCTCC--TTTG--------------------------- 856
BSNT_02251___ 723 CCATGG---CACATTAAGAGAGGTATCGTTTATCGGTTTCGAATTCC--- 766
|||| |.|.|||||||||..| |||||.|| ||||
BPUM_1666___l 857 --ATGGGTCCGCCTTAAGAGAGCCA-CGTTTTTC---------TTCCTTT 894
BSNT_02251___ 767 -AAATGG--ACTGGACCGAA-----TGCACGTATGCGCAAGTCATACGAC 808
.|.||| ||| ||.|.|| ||.||||.|..||||.|..|
BPUM_1666___l 895 TTACTGGATACT-GATCCAACGGCGTGTACGTTTCAGCAAATGCT----- 938
BSNT_02251___ 809 ACTCCAAACCGGT------TCACCCAAAGCTC---CAGTTCAC-AAGCCT 848
|||||.|.| ||..||.|...|| .||.|||| .|.|||
BPUM_1666___l 939 ----CAAACAGCTATATCCTCTTCCTACTGTCATTGAGATCACTCATCCT 984
BSNT_02251___ 849 GGATAA--AA-------------TCATATTTGAAAAGAATAAAAAAACAA 883
|.|.|| || ||||.| |||| |
BPUM_1666___l 985 GAAAAACCAATTGTGCCGGCTCTTCATCT-------GAAT---------A 1018
BSNT_02251___ 884 AAGAAGATTTTATTCAGTATATGATTGAAGTCAGTGACTACCTGCT---- 929
|.|.||| |||.|.|.|.||| |||| |||.|.|||||
BPUM_1666___l 1019 AGGCAGA--TTACTTACTTTAT--TTGA-------GACAAGCTGCTCCTT 1057
BSNT_02251___ 930 --------CCCATTT---CTGAAAAACCGGGCTGTCACCGTCATCCGCTA 968
|||.||| .|||||.|| ||||| ||..|.||.||.|.
BPUM_1666___l 1058 ATCTCTTGCCCTTTTTACGTGAAAGAC--GGCTG--ACTTTAATTCGGTT 1103
BSNT_02251___ 969 TCCGCATGGATCTAGGAGCGAATCATTTTTCCAAAAAAACAAACCGGACT 1018
|||.|||||..||.||...||||..||||..|||||....|.|||.||.|
BPUM_1666___l 1104 TCCTCATGGTGCTGGGGATGAATTCTTTTATCAAAAGTCGACACCTGATT 1153
BSNT_02251___ 1019 ATGCGCCGGATTTTGT---------TCAATCTTTCTATGATGGAAGCCAT 1059
|||||||.||||.||| ||||.| |||||
BPUM_1666___l 1154 ATGCGCCAGATTATGTGTTGACCGATCAAGC------TGATG-------- 1189
BSNT_02251___ 1060 GAACATATT---------GTCTGTGAGGATATGTCT---ACATTGCTATG 1097
||||| ||.|||.|.||| .|| ||..|.||.||
BPUM_1666___l 1190 ----ATATTGCTTACACAGTTTGTAATGAT---CCTCAGACGCTTCTTTG 1232
BSNT_02251___ 1098 GCTTTGCAACCAGCTTGCTTTGGAGTTTCACGTTCCTTTTCAAACCATTA 1147
|||..||||||||.|.||..||||.|||||..||||||||.||||
BPUM_1666___l 1233 GCTCGGCAACCAGTTGGCAATGGAATTTCATATTCCTTTTGAAAC----- 1277
BSNT_02251___ 1148 AAAG---------CAGGCGTCCGGCTGAGATTGTCATTGATTTAGACCCG 1188
||| |||| ||..|.||.||.|||.|||||||||||||.
BPUM_1666___l 1278 -AAGGGATACGGACAGG---CCAACCGAAATCGTCTTTGATTTAGACCCA 1323
BSNT_02251___ 1189 CC-----TTCGCGAGATGACTTTCTTATGGCCGTGCAGGCCGC-AAATGA 1232
|| ||..|||| ||||.|.|.|||.|..|.||.|| ||..||
BPUM_1666___l 1324 CCGTCTGTTAACGAG-----TTTCATCTAGCCATAGAAGCTGCTAAGCGA 1368
BSNT_02251___ 1233 ACTGAAGCGGCTGTTGGATTC---CTTTGGCATCACATCGT--------A 1271
| |.||...|||.||.|| | ||||..| |||||.|.| |
BPUM_1666___l 1369 A-TCAAAACGCTTTTAGA--CGGTCTTTTTC-TCACAGCCTTTATTAAAA 1414
BSNT_02251___ 1272 CCCGAAGCTGTCCGGCAACAAAGGCATCCAGCTTTATATTCCCTTGTCTC 1321
| ||||.|| || .|||||..|.||..||||||||||.||
BPUM_1666___l 1415 C---AAGCGGT--GG---TAAAGGACTGCAAGTTTATATTCCATT----- 1451
BSNT_02251___ 1322 CCGAG------GCATTTACGTATGAAGAAAC----ACGCCAATTTACGCA 1361
..|| ||.||.||.||.|||||||| || ||||||
BPUM_1666___l 1452 -AAAGAAAAATGCCTTCACATACGAAGAAACGAGAAC----ATTTAC--- 1493
BSNT_02251___ 1362 GCTGATCGC----AGA-GTACTGCACCAATGCATTT-------------- 1392
||| |.| || |||| |||
BPUM_1666___l 1494 ------CGCGTTTATATGT-------CAAT---TTTTATGTGAACAAGCA 1527
BSNT_02251___ 1393 CCCGAGCTCTTTACCACTGAACG-CTTGATTAAAAACAGACACGGCAA-- 1439
||.|||.|.|||||....||||| | |||||||.|.||..|||||
BPUM_1666___l 1528 CCTGAGTTATTTACTTTGGAACGTC----TTAAAAAAAAACGTGGCAATC 1573
BSNT_02251___ 1440 -ATTGTATCTTGATTATTTGCAGCATGCAGAAGGAAAAACGATTATCTG- 1487
.||||||.|.||.|||.|.|||||.|..|..||||||||.||.|| ||
BPUM_1666___l 1574 GCTTGTATTTAGACTATATTCAGCACGATGCTGGAAAAACAATCAT-TGC 1622
BSNT_02251___ 1488 TCCCTATTCGACGAGAGGAAATGAGCTTGGGAC-TGTTGCAGCCCCGCTC 1536
.||.|||||..|||||||||||||.||| |||| |||.||..|.|||||.
BPUM_1666___l 1623 GCCTTATTCACCGAGAGGAAATGAACTT-GGACTTGTAGCGACACCGCTT 1671
BSNT_02251___ 1537 TACTGGCATG----------AGGTGCAATCATCTTTAACACCC-GCTCTG 1575
.|.|||.|.| ||.||.| ||| ||||| .||.||
BPUM_1666___l 1672 GAATGGGACGAACTCCGTCAAGATGGA-----CTT---CACCCTTCTTTG 1713
BSNT_02251___ 1576 TTTACAAT--------TGATACGGTCATCGATCGAATTAAGAAGCAGGGC 1617
|||||.|| ||||| ||.||..|.|||.|..|.|||
BPUM_1666___l 1714 TTTACCATGCCATCTGTGATA--------GAGCGTCTAAAGGAAAAAGGC 1755
BSNT_02251___ 1618 TGCCCATTTTTTGATTTTTACCGCAACCCGCAAGACGAAC---------- 1657
...||||| ||| |||||.||.|.||
BPUM_1666___l 1756 GATCCATT------------CCG----CCGCATGAGGCACCTTGTAAATG 1789
BSNT_02251___ 1658 ------CGCTTAGCGCCA--TATTGCATC-AGTTGAAGAAAAAGAGCTGA 1698
||.|.| |.|| |.||||||| |.||||.||.| |||
BPUM_1666___l 1790 ATGACACGTTCA--GACAAGTTTTGCATCGACTTGAGGACA------TGA 1831
BSNT_02251___ 1698 ----------------------------------- 1698
BPUM_1666___l 1832 TCCCAGCACATAAGATGGACATACGCGGTCATTAA 1866
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