Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02706 and BPUM_1568

See DNA alignment / Visit BSNT_02706 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:20
# Commandline: needle
#    -asequence pep-align/BSNT_02706___rbfA.1.24716.seq
#    -bsequence pep-align/BPUM_1568___rbfA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02706___rbfA-BPUM_1568___rbfA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02706___rbfA-BPUM_1568___rbfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02706___rbfA
# 2: BPUM_1568___rbfA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 117
# Identity:      98/117 (83.8%)
# Similarity:   106/117 (90.6%)
# Gaps:           3/117 ( 2.6%)
# Score: 485.0
# 
#
#=======================================

BSNT_02706___      1 --MRANRVGEQMKKELGDIISRKLKDPRIGFLTVTDVRVSGDLQIAKVYI     48
                       |||.|||||||||||||:.||||||||||||||||.||||||||||||
BPUM_1568___r      1 MSMRATRVGEQMKKELGDILGRKLKDPRIGFLTVTDVEVSGDLQIAKVYI     50

BSNT_02706___     49 SVLGDEKKREEALKGLAKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYG     98
                     |||||||||||.|||||||||:||||||:|||||||||:.||||||:|||
BPUM_1568___r     51 SVLGDEKKREETLKGLAKAKGYIRSEIGNRIRLRKTPELHFEFDESVDYG    100

BSNT_02706___     99 NRIETLIHELHSEKPSE    115
                     ||||:||.||:: |..|
BPUM_1568___r    101 NRIESLIAELNT-KDHE    116


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.