Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02706 and BPUM_1568
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_02706___rbfA.1.24716.seq
# -bsequence dna-align/BPUM_1568___rbfA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02706___rbfA-BPUM_1568___rbfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02706___rbfA-BPUM_1568___rbfA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02706___rbfA
# 2: BPUM_1568___rbfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 357
# Identity: 264/357 (73.9%)
# Similarity: 264/357 (73.9%)
# Gaps: 15/357 ( 4.2%)
# Score: 965.5
#
#
#=======================================
BSNT_02706___ 1 ------ATGAGAGCAAACCGTGTCGGCGAGCAAATGAAAAAAGAACTCGG 44
||||||||||.|||.||.||.|||||.||||||||||||.|.||
BPUM_1568___r 1 ATGAGTATGAGAGCAACCCGCGTGGGTGAGCAGATGAAAAAAGAATTAGG 50
BSNT_02706___ 45 TGATATTATCAGCCGCAAGCTGAAAGACCCGAGAATTGGTTTTCTGACAG 94
.||.||..|..||.|.|||||.|||||.||||||||.||.|||.||||.|
BPUM_1568___r 51 CGACATCCTAGGCAGAAAGCTAAAAGATCCGAGAATCGGCTTTTTGACTG 100
BSNT_02706___ 95 TAACGGATGT--ACGTGTATCAGGTGATTTGCAAATTGCAAAGGTGTATA 142
||||.||||| |.||| ||.|||||||||||||||||.||.|||||.|
BPUM_1568___r 101 TAACCGATGTCGAAGTG--TCCGGTGATTTGCAAATTGCGAAAGTGTACA 148
BSNT_02706___ 143 TCTCGGTTCTCGGTGACGAGAAAAAACGGGAAGAAGCGCTGAAAGGGCTG 192
|.||.|||||||||||||||||.|||.|.||.|||.|..|.|||||.||.
BPUM_1568___r 149 TTTCTGTTCTCGGTGACGAGAAGAAAAGAGAGGAAACCTTAAAAGGCCTT 198
BSNT_02706___ 193 GCAAAAGCGAAAGGATTTATCCGATCCGAAATCGGCAGCCGCATCAGACT 242
|||||.||.|||||.|.||||||.||.|||||.||||..||.||.|||||
BPUM_1568___r 199 GCAAAGGCTAAAGGGTATATCCGTTCTGAAATTGGCAATCGAATTAGACT 248
BSNT_02706___ 243 TCGAAAAACGCCTGAAATTGAATTTGAGTTCGATGAATCAATCGATTACG 292
|||.|||||.||.|||.|..|.|||||.|||||||||||..|.|||||||
BPUM_1568___r 249 TCGCAAAACACCAGAACTGCACTTTGAATTCGATGAATCCGTGGATTACG 298
BSNT_02706___ 293 GGAATCGGATCGAAACACTGATTCACGAATTACATTCAGAGAAACCATC- 341
|.||.||.||.||||..||.|||...|||.|| .|.|.|||..|||
BPUM_1568___r 299 GAAACCGAATTGAAAGCCTAATTGCTGAACTA----AACACAAAAGATCA 344
BSNT_02706___ 342 TGAATAA 348
.||||||
BPUM_1568___r 345 CGAATAA 351
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