Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02683 and BPUM_1546

See DNA alignment / Visit BSNT_02683 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence pep-align/BSNT_02683___sigD.1.24716.seq
#    -bsequence pep-align/BPUM_1546___sigD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02683___sigD-BPUM_1546___sigD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02683___sigD-BPUM_1546___sigD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02683___sigD
# 2: BPUM_1546___sigD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 255
# Identity:     225/255 (88.2%)
# Similarity:   242/255 (94.9%)
# Gaps:           1/255 ( 0.4%)
# Score: 1175.0
# 
#
#=======================================

BSNT_02683___      1 MQSLNYEDQVLWTRWKEWKDPKAGDDLMRRYMPLVTYHVGRISVGLPKSV     50
                     |||||||||.||.||||||||.|||||||||||||||||||||:||||||
BPUM_1546___s      1 MQSLNYEDQALWARWKEWKDPAAGDDLMRRYMPLVTYHVGRISIGLPKSV     50

BSNT_02683___     51 HKDDLMSLGMLGLYDALEKFDPSRDLKFDTYASFRIRGAIIDGLRKEDWL    100
                     ||:||:||||||||||||||||.|||||||||||||||||||||||||||
BPUM_1546___s     51 HKEDLISLGMLGLYDALEKFDPGRDLKFDTYASFRIRGAIIDGLRKEDWL    100

BSNT_02683___    101 PRTSREKTKKVEAAIEKLEQRYLRNVSPAEIAEELGMTVQDVVSTMNEGF    150
                     ||||||||||||||||||||||||||:|.|:||||||:.||||:||||||
BPUM_1546___s    101 PRTSREKTKKVEAAIEKLEQRYLRNVTPTEVAEELGMSEQDVVTTMNEGF    150

BSNT_02683___    151 FANLLSIDEKLHDQDDGENIQVMIRDDKNVPPEEKIMKDELIAQLAEKIH    200
                     ||||||||||||||:||||:||||||:|.|.||||::|||||.|||||:.
BPUM_1546___s    151 FANLLSIDEKLHDQEDGENVQVMIRDEKTVTPEEKMLKDELIEQLAEKMT    200

BSNT_02683___    201 ELSEKEQLVVSLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLKNLLE    250
                     ||||||:||:||||||||||||||.|||||||||||||||||||||:||:
BPUM_1546___s    201 ELSEKEKLVISLFYKEELTLTEIGHVLNLSTSRISQIHSKALFKLKHLLD    250

BSNT_02683___    251 KVIQ-    254
                     |.|| 
BPUM_1546___s    251 KAIQS    255


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