Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02683 and BPUM_1546

See Amino acid alignment / Visit BSNT_02683 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_02683___sigD.1.24716.seq
#    -bsequence dna-align/BPUM_1546___sigD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02683___sigD-BPUM_1546___sigD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02683___sigD-BPUM_1546___sigD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02683___sigD
# 2: BPUM_1546___sigD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 770
# Identity:     601/770 (78.1%)
# Similarity:   601/770 (78.1%)
# Gaps:           7/770 ( 0.9%)
# Score: 2306.0
# 
#
#=======================================

BSNT_02683___      1 ATGCAATCCTTGAATTATGAAGATCAGGTGCTTTGGACGCGCTGGAAAGA     50
                     |||||||||||.|||||.||||||||||.|||.|||.|..|.||||||||
BPUM_1546___s      1 ATGCAATCCTTAAATTACGAAGATCAGGCGCTATGGGCTAGATGGAAAGA     50

BSNT_02683___     51 GTGGAAAGATCCTAAAGCCGGTGACGA-CTTAATGCGCCGTTACATGCCG     99
                     ||||||.||.||....||.||.||.|| ||| ||||||||.||.||||||
BPUM_1546___s     51 GTGGAAGGACCCAGCTGCTGGAGATGATCTT-ATGCGCCGCTATATGCCG     99

BSNT_02683___    100 CTTGTCACATATCATGTAGGCAGAATTTCTGTCGGGCTGCCGAAATCAGT    149
                     ||.||||||||||||||.||.||||||||..||||.||.|||||.|||||
BPUM_1546___s    100 CTCGTCACATATCATGTTGGAAGAATTTCCATCGGTCTCCCGAAGTCAGT    149

BSNT_02683___    150 GCATAAAGACGATCTT-ATGAGCCTTGGTATGCTTGGTTTATATGATGCC    198
                     |||||||||.|| ||| ||.||.||.||.|||||.|||||||||||||||
BPUM_1546___s    150 GCATAAAGAAGA-CTTGATCAGTCTAGGGATGCTCGGTTTATATGATGCC    198

BSNT_02683___    199 CTTGAAAAATTTGACCCCAGCCGGGACTTAAAATTTGATACCTACGCCTC    248
                     ||||||||||||||||||.|..|.||..|.||.||||||||.||.||.||
BPUM_1546___s    199 CTTGAAAAATTTGACCCCGGAAGAGATCTGAAGTTTGATACATATGCATC    248

BSNT_02683___    249 GTTTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGC    298
                     .||.|||||.|||||.||.|||||.|||||.|||||||||||.||.||||
BPUM_1546___s    249 CTTCAGAATCCGCGGGGCCATCATCGACGGTCTTCGTAAAGAGGACTGGC    298

BSNT_02683___    299 TGCCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAA    348
                     ||||..|.||.||..|.|||||.||||||||.||.|||||.||.||||||
BPUM_1546___s    299 TGCCTCGTACATCAAGAGAAAAGACAAAAAAAGTAGAAGCGGCGATTGAA    348

BSNT_02683___    349 AAGCTTGAACAGCGGTATCTTCGGAATGTATCGCCCGCGGAAATTGCAGA    398
                     |||||||||||.||.|||.|.||.|||||..||||..|.|||.|.||.||
BPUM_1546___s    349 AAGCTTGAACAACGCTATTTACGAAATGTGACGCCGACAGAAGTGGCTGA    398

BSNT_02683___    399 GGAACTCGGAATGACGGTACAGGATGTCGTGTCAACAATGAATGAAGGTT    448
                     ||||||.||.||||..|.|||||||||.||..||||||||||||||||||
BPUM_1546___s    399 GGAACTTGGCATGAGTGAACAGGATGTTGTCACAACAATGAATGAAGGTT    448

BSNT_02683___    449 TTTTTGCAAATCTGCTGTCAATTGATGAAAAGCTCCATGATCAAGATGAT    498
                     |.||||||||||||||.|||||.||.||.|||||.|||||||||||.||.
BPUM_1546___s    449 TCTTTGCAAATCTGCTTTCAATCGACGAGAAGCTTCATGATCAAGAAGAC    498

BSNT_02683___    499 GGGGAAAACATTCAAGTCATGATCAGAGATGACAAAAATGTTCCGCCTGA    548
                     ||.||||||.|.|||||||||||..|.||.||.||||.|||..|.|||||
BPUM_1546___s    499 GGTGAAAACGTCCAAGTCATGATTCGCGACGAGAAAACTGTGACACCTGA    548

BSNT_02683___    549 AGAAAAGATTATGAAGGATGAACTGATTGCACAGCTTGCGGAAAAAATTC    598
                     |||.|||||..|.||.||||||.|.||.|.|||||||||.||||||||..
BPUM_1546___s    549 AGAGAAGATGCTAAAAGATGAATTAATAGAACAGCTTGCTGAAAAAATGA    598

BSNT_02683___    599 ACGAACTCTCTGAAAAAGAACAGCTGGTTGTCAGTTTGTTCTACAAAGAG    648
                     .|||.||.||.|||||||||.||||.||..|||||.|.||.||.||||||
BPUM_1546___s    599 CCGAGCTATCGGAAAAAGAAAAGCTCGTGATCAGTCTATTTTATAAAGAG    648

BSNT_02683___    649 GAGTTGACACTGACAGAAATCGGACAAGTATTAAATCTTTCTACGTCCCG    698
                     ||..||||..|.||.||||||||.||.||..|.|||.|.||.||.||.||
BPUM_1546___s    649 GAACTGACGTTAACGGAAATCGGTCACGTGCTCAATTTATCGACCTCACG    698

BSNT_02683___    699 CATATCTCAGATCCATTCAAAGGCATTATTTAAATTAAAGAATCTGCTGG    748
                     |||.||.||.||.|||||.||||||||.||.||..|.|||.|||||||.|
BPUM_1546___s    699 CATTTCGCAAATTCATTCTAAGGCATTGTTCAAGCTTAAGCATCTGCTTG    748

BSNT_02683___    749 AAAAAGTGATACAA---TAA    765
                     |.||||..||.|||   |||
BPUM_1546___s    749 ATAAAGCCATTCAATCTTAA    768


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